Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4385 |
Symbol | |
ID | 1186066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4946342 |
End bp | 4948633 |
Gene Length | 2292 bp |
Protein Length | 763 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395726 |
Product | Rhs element Vgr protein |
Protein accession | NP_794140 |
Protein GI | 28871521 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGACG CAAACGCAAC CCATATTGCC CTCACCCTGG AGGGGATATC CGTTGATTTT CAGGTGCTCA GCTTCTTAGG CAGTGAAGCC CTTAATCAGC CGTTCTGCTT CGACATCGAA CTGGTCAGCG CCCGCCCCGA TCTGAAGCTC GAAGAGTTGC TGCACAAGCG TGGCTGCCTG ACCTTCGGCG CCACAGGCAA CGGCCTTGTT CACGGTCTGG TCTATCGCAT CACGCAAGGC GACTCTGGCA AAAGCCTGAC CCGCTACAGC ATCAGGCTCG TGCCGCAGCT GTCTTACCTG CGCCACAACC ACGACCAACA AATCTTCCAG CATCTGACCG TACCGAAGAT CATCGCGAAG GTCCTCGAAG CCCGTGGCAT CCTGGCCGAC GCCTACCGCT TTCAGCTCGG CGCGACCTAC CCCAAGCGCG ATTACTGCGT GCAGTACGAC GAGTCAGACC TGCATTTCAT CCAGCGTCTG TGCGAAGAAG AAGGCATTCA CTTCCACTTC CAGCACAGTG CCAGCGGTCA CACACTGGTG TTCGGCGATG ATCAGACGGT GTTCCGAAAA TTAGCGCCAG TGAGCTACCA GCAAGACTCC GGCATGGCCG CCGAAAGGCC GGTGATCAAA CGTTTCAACC TGCGTCTGGA AACCCGCACC ACCCGCGTCA GCCGCCGGGA TTACGATTTC GAAAAGCCCA GCATCCTACC CCAAGGCAGT GCCAAGATCG CCGCCTCGCC GGACCTTGAA GACTACGATT ACCCTGGCCG CTTTACCGAC AGCGAACGCG GCAAACAACT GAGCACCCGC GCACTTGAAC GTCATCGCGC CGATTACGCA CTGGTCGAGG GCAAAGGCGA CGAGCCGACG CTGGTCAGCG GCCATTTCCT GGCCCTGAGC GAGCATCCGC GCGCAGAGTG GAACGACCTT TGGCTACTGC TGGAAGTCAT TCACGAGGGC AAACAGCCGC AAGTGCTGGG CGAAAACGTC ACCAGCGACG TCACGGATAA CAAAGACGAT TTTCACCAAG GTTACCACAA TCGCTTCCTG GCAACGCCGT GGGATGCGCA TTACCGCCCT GCTCTGGAAC ATCCAAAACC CAAAGCGCTG GGTATCCAGA CGGCTTTCGT CACCGGGCCA CCGGGTGAAG AAATCCATTG CGACGAATAC GGGCGTGTCA AAGTCCAGTT CCATTGGGAT CGTGACGGTC AGGCCAACGA TAACTCCAGC TGCTGGTTGC GCGTCGCCAC TGGCTGGGCC GGAAATGCTT ACGGTGGCAT CACCACTCCA CGCGTCGGTA TGGAAGTGCT TGTCACCTAC CTCGAAGGCG ACCCCGACCA ACCGCTGATC ACCGGCTGCC TGTTTCACAA GGAAAACGTC GCCCCCTACG ACCTGCCCGC GAACAAGACA CGCAGCACCT TCAAGACGCT CAGCTCACCG GGCGGCAAGG GCTACAACGA GTTTCGTATC GAAGACAAGA AAGGTGCCGA ACAGATCTAC CTGCACGCCC AGCGCGACTG GGATGAAAAC ATCGAACACG ACCAGAAAAT CCGCGTCGGC AACGAGCGCC ACGACACCGT TGAAGCCAAC ACCCTCAGCG AATTCAAGCT AGAGGAGCAC CGCATCACCC ACCTGGACCG CAAGAGCGAA GCACGGGCGG ATGACCATTT GACCGTCGGC GCGACCCGGC ACGTGAAAAT CGGCACCGCG CAGTTTGTAG AAGCCGGTAC GGAGATTCAC TACCACGCGG GCAACAAAGT GGTGGTTGAA GGCGGCGTGG AACTGACAGT CAAGGCCGGC GGTAGCTTCG TCAAGATTGA TGCAGGTGGC GTGACAATCA GCGGTCCCGA GGCGAAGGTC AATACAGGAG GTTCTGCAGG TGTCGGGGCC GGGATCGGCA TTCTTGCCCC GCTCATTCCA GGGCTGGCTG CTGCCGACGC CGCCGGAAAC CTGATGAAAG AAGCCAAGGC CAACCCGACC TGGCTGGAGC TGAACCTGCA TTACGACAAC CTTGAGCCGG TGCCGGGTGC CTCGTATCGC GTCGACTTTG CTGATGGGTC TAAGCGCGAG GGCGTGCTGG ACGACGACGG CTTCGCCCGG CTCGAAAATG TTCCGCAAGG GCCGGCCAAG ATCTACTACG GCGAAAATCC GAGGCCTTTC AATCGTGAAG GCGTGACCGT TGCTCAGAAC TCGGATGAAA AGGTTAACCA AGATCTACGC AAACTCGGTC TGGACCCAGA TCAGATCGAT TTACCGGCTC TAGTAGAAAA AGTCGCAGGG AGAGTGTCAT GA
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Protein sequence | MLDANATHIA LTLEGISVDF QVLSFLGSEA LNQPFCFDIE LVSARPDLKL EELLHKRGCL TFGATGNGLV HGLVYRITQG DSGKSLTRYS IRLVPQLSYL RHNHDQQIFQ HLTVPKIIAK VLEARGILAD AYRFQLGATY PKRDYCVQYD ESDLHFIQRL CEEEGIHFHF QHSASGHTLV FGDDQTVFRK LAPVSYQQDS GMAAERPVIK RFNLRLETRT TRVSRRDYDF EKPSILPQGS AKIAASPDLE DYDYPGRFTD SERGKQLSTR ALERHRADYA LVEGKGDEPT LVSGHFLALS EHPRAEWNDL WLLLEVIHEG KQPQVLGENV TSDVTDNKDD FHQGYHNRFL ATPWDAHYRP ALEHPKPKAL GIQTAFVTGP PGEEIHCDEY GRVKVQFHWD RDGQANDNSS CWLRVATGWA GNAYGGITTP RVGMEVLVTY LEGDPDQPLI TGCLFHKENV APYDLPANKT RSTFKTLSSP GGKGYNEFRI EDKKGAEQIY LHAQRDWDEN IEHDQKIRVG NERHDTVEAN TLSEFKLEEH RITHLDRKSE ARADDHLTVG ATRHVKIGTA QFVEAGTEIH YHAGNKVVVE GGVELTVKAG GSFVKIDAGG VTISGPEAKV NTGGSAGVGA GIGILAPLIP GLAAADAAGN LMKEAKANPT WLELNLHYDN LEPVPGASYR VDFADGSKRE GVLDDDGFAR LENVPQGPAK IYYGENPRPF NREGVTVAQN SDEKVNQDLR KLGLDPDQID LPALVEKVAG RVS
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