Gene PSPTO_4317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4317 
Symbol 
ID1185998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp4868002 
End bp4868709 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content62% 
IMG OID637395659 
Producthypothetical protein 
Protein accessionNP_794073 
Protein GI28871454 
COG category[S] Function unknown 
COG ID[COG1714] Predicted membrane protein/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.409014 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCCAAGGA ATGCAGCGCT GAACATGCAA CTGGACACGC GCATCGAGAT CGAGACGCCA 
GAAGGCATCG ATATGGTTCT TCGCCCCGCA GGCCTTGTGT CCCGTGCGTT GGCGTTCGGC 
ATCGACCTGG CCATTCGTGG CGCCCTGATT GGCGTGTTCT ATCTGTTTCT GCAGTTCTTC 
GACAAGCTCG GCATTGGTCT GGGCGCCATT GTGTTTTTTC TGGTGAACTG GTGGTACATG 
GTGCTGTTCG AGGTGCTGAG CCAAGGTCGC ACACCGGGCA AGCGATCCCT GGGGTTGCGC 
GTCGTTCACG ACGACGGCAC GCCCATAGAC TGGTCTTCGT CGCTCATACG CAACCTGTTG 
CGCTTCGTCG ACATGCTGCC TCTGGGCTAT GGATTGGGAG CGGTCACCTG CCTGAGCCAC 
CCTCGGTTCA AGCGCCTGGG AGATCTAGCG GCCGGGACAC TGGTGGTCTA CATCGACCGG 
CCGTTAACGC GCCCCGTCCT GCCGGAGGCG CAGCCGATTG TCGCGCCGTT TGCCCTGCAT 
CTGGATGAAC AGCGTGCTGT GCTCGGCCTG GCGGAGCGCC ATGGAGAGCT GTCCAGCGCA 
CGCATTCAGG AGCTGGCCGC CATTCTTGCC GAACCACTGC GCATACCCGC TGGCAAAGCA 
GTCGCGCAGG TGAACGGCAT CGCCCGCAAC CTGTTGGGGC CACGATGA
 
Protein sequence
MPRNAALNMQ LDTRIEIETP EGIDMVLRPA GLVSRALAFG IDLAIRGALI GVFYLFLQFF 
DKLGIGLGAI VFFLVNWWYM VLFEVLSQGR TPGKRSLGLR VVHDDGTPID WSSSLIRNLL 
RFVDMLPLGY GLGAVTCLSH PRFKRLGDLA AGTLVVYIDR PLTRPVLPEA QPIVAPFALH 
LDEQRAVLGL AERHGELSSA RIQELAAILA EPLRIPAGKA VAQVNGIARN LLGPR