Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4303 |
Symbol | |
ID | 1185984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4850512 |
End bp | 4851672 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395645 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | NP_794059 |
Protein GI | 28871440 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTCA AGCCAGCTGT TACCGTTCTG GTCACTGCCG TCGCCCTGGC AACCCTGCTC AGTGGCTGTA GCAAGAAGGA ACAGGCGGCC CCGCCTGCGC AAACCCCTCA GGTCGGCGTC GTTACCCTCA AAGCACAGCC CTACACCCTG ACCACCGAGC TTCCGGGCAG GACGACCGCT TTCCGTGTGG CCGAGGTCCG CCCTCAGGTC AACGGCATCA TTCTCAAGCG TCTGTTCACC GAAGGTGGTG ACGTCAAGGC CGGTCAGCAG CTGTATCAGA TCGACCCGGC TATCTATGAA GCCAACGCCA ACAGTGCCAA GGCGACCCTG CAGTCTGCCA AGTCGATGTC TGATCGCTAC AAGCAACTGG TCAACGAACA GGCGGTGAGT CGTCAGGAAT ACGACACCGC CCTGGCATCC ACTCAGGAAG CACAGGCAGC GCTGCAGACT TCGCAGATCA ACCTGCGCTT CACCAAGGTG CTGGCGCCGA TCTCGGGCCG CATCGGGCGC TCTGCCGTTA CCGAAGGCGC GCTGGTCAGC AGTGCCCAGG CAGACGCAAT GGCAACCATT CAGCAGCTTG ATCCGATCTA CGTGGACGTA GTCCAGTCTT CCGCAGACAT GCTCAAGCTG CGCAATGACC TGGACAGCGG CAAACTGCAG AAGTCCGGCG ACAACGCCGC CAAGGTCAAG CTGACCCTGG AAGACAACAG CGTTTACGCT CAGGAAGGCA AACTGGAGTT CTCCGAAGTG TCGGTTGACC AGACCACCGG TTCCGTCACT CTGCGCGCAG TCTTCCCCAA CCCTGAACAC CGCTTGCTGC CCGGCATGTT CGTTCACGCG CAATTGCAGG CAGGCGTCAG TGCGAAAGCC ATTCTGGCAC CGCAACAAGG CGTGACCCGC GACCTGAAAG GCACGCCGAC CGCCATGATT GTCAATCAGG ACAACAAGGT TGAATTGCGC ACACTGGTCG CCAACCGCAC CGTGGGCAGC GACTGGCTGA TCGAGGACGG CCTGAAAGAA GGCGATCGCG TGATCACCGA AGGTCTGCAA TACGTCAAAC CAGGCGCAGA AGTGAAAGCT GCCGAAGCGA CCAACGTCAA AGGAGCAAAC CCGGCACCTG CCCCGGCCAC TGAAAAAGCC GCAGGCAGCA AAGGGGAGTA A
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Protein sequence | MQFKPAVTVL VTAVALATLL SGCSKKEQAA PPAQTPQVGV VTLKAQPYTL TTELPGRTTA FRVAEVRPQV NGIILKRLFT EGGDVKAGQQ LYQIDPAIYE ANANSAKATL QSAKSMSDRY KQLVNEQAVS RQEYDTALAS TQEAQAALQT SQINLRFTKV LAPISGRIGR SAVTEGALVS SAQADAMATI QQLDPIYVDV VQSSADMLKL RNDLDSGKLQ KSGDNAAKVK LTLEDNSVYA QEGKLEFSEV SVDQTTGSVT LRAVFPNPEH RLLPGMFVHA QLQAGVSAKA ILAPQQGVTR DLKGTPTAMI VNQDNKVELR TLVANRTVGS DWLIEDGLKE GDRVITEGLQ YVKPGAEVKA AEATNVKGAN PAPAPATEKA AGSKGE
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