| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4276 |
|---|
| Symbol | |
|---|
| ID | 1185957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4817118 |
|---|
| End bp | 4818041 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637395618 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | NP_794032 |
|---|
| Protein GI | 28871413 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCC ACAACCTGAA CGACATTGCC GCCTTTGTAA GCTCCGTAAA TGCTGGCAGC
TTCACTGCGG CGGCGAAGCA GCTGGGGCTC ACTCGCTCGG CGGTGGGGAA GTCGATAGTC
AGGCTTGAGG CTCGTTTGCA AGTACGCCTG CTCAATCGCA CCACTCGCAG CTTGAGCATG
ACCGACGACG GCCAGGTTCT TTATGAGCGG TGTGTGGGTG TTCTTCAGGA TCTGGACGAT
GTGGAAGACG CCTTGGCGTT TCGCCGCTCG ACTCCCAGTG GACGGCTGCG GATGAGCCTG
CCGGTTGCAT TGGGCAGGCT CCACGTTCTC CAACACATCG AACGCTGCCT GAAAGATTGG
CCCTCCTTGA GCGTGGATAT CACTTTTTCC GACAGGTTGG TCGATCTTAT CGATGAAGGA
TTTGATCTGG CCATGCGTAT CGGGCCGCCC AAGGAGGACT CTAGGCTACT CACACGTACA
GTGGCCTACC AACAAATGAT CACCTGTGCT TCACCAAAGT ATCTGGCTGA GCATCCACAG
CCCCAAACGC CGGACGATCT TTCCGAGCAC CAGTGTCTGC ATTTTGTGAG CGGTGGAAGA
CTGCTTCCCT GGAATTTTCG AGTCAATGAT CGCTCTTTGT CCGTTACTCA TGGCGGAAGG
CTGCAAATGG ACAGTGCTGA GTCACTGCAC CAGTCAGCTG TCGCTGGTTT GGGTATAGCG
ACTCTGCCGT CCTACGTGAT TAACGACGAC TTGCGCAGCG GAAAGCTCGT TCAACTGCTC
GCGGAGTACG CGGAGGCGGC GGAGCCTATT CGGGTGATCT ACCCTAGTAA GCGGCACCTC
TCTCCAAAAA TTCGACTCTT TATCGATAAG CTCGTAGAGG CTTGGTCGCC TTGTCCGCCG
TGGGAACAGC ATTCTGACCG GTGA
|
|---|
| Protein sequence | MELHNLNDIA AFVSSVNAGS FTAAAKQLGL TRSAVGKSIV RLEARLQVRL LNRTTRSLSM
TDDGQVLYER CVGVLQDLDD VEDALAFRRS TPSGRLRMSL PVALGRLHVL QHIERCLKDW
PSLSVDITFS DRLVDLIDEG FDLAMRIGPP KEDSRLLTRT VAYQQMITCA SPKYLAEHPQ
PQTPDDLSEH QCLHFVSGGR LLPWNFRVND RSLSVTHGGR LQMDSAESLH QSAVAGLGIA
TLPSYVINDD LRSGKLVQLL AEYAEAAEPI RVIYPSKRHL SPKIRLFIDK LVEAWSPCPP
WEQHSDR
|
|---|
| |