| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4258 |
|---|
| Symbol | |
|---|
| ID | 1185939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4798233 |
|---|
| End bp | 4798754 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637395603 |
|---|
| Product | NAD(P)H dehydrogenase, quinone family |
|---|
| Protein accession | NP_794017 |
|---|
| Protein GI | 28871398 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2249] Putative NADPH-quinone reductase (modulator of drug activity B) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATACTGA TCATTTACGC CCATCCTTAT CCTGAAAAAT CCAGTGTTAA CAGCCTGATG
CTCAGGCTGG CTGCTAATAA TCCTGAAGTC GTTATTCGCT CCTTGTACGA CCTATACCCA
GATTTCGATA TCAATGTAGA AGCCGAGCAA ATGGCAGTAG AAAAGGCAGA TCTGCTGGTT
CTGCAGCATC CTTTGCACTG GTACAACTAC CCACCACTTT TAAAATTGTG GATCGATAAA
GTTTTCACCA GTGGCTGGGC CTATGGCGTC GGTGCAGCCG CCCTCAAAAA TAAGTATTTA
CTATGGGCTG TAACCATGGG CGAAGAGCAT GATCAATTTG AAGGCGGTGA ATACCCAGGC
TTTCCGGTTC TTGCGCAGCC TCTACAGGCG ACGGCGAATT ACTGCGGTAT GCATTGGTTA
AGACCAGTCG CAATTCACGG CACATACCAA GCTGATCACG CCGCACTTAT TAAGCAAATT
CGCCGTTACG GCGAGCGTCT AGCCACTTGG AGGGAAGTTT GA
|
|---|
| Protein sequence | MILIIYAHPY PEKSSVNSLM LRLAANNPEV VIRSLYDLYP DFDINVEAEQ MAVEKADLLV
LQHPLHWYNY PPLLKLWIDK VFTSGWAYGV GAAALKNKYL LWAVTMGEEH DQFEGGEYPG
FPVLAQPLQA TANYCGMHWL RPVAIHGTYQ ADHAALIKQI RRYGERLATW REV
|
|---|
| |