Gene PSPTO_4224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4224 
SymbolrpoE 
ID1185904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4757624 
End bp4758205 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content54% 
IMG OID637395570 
ProductRNA polymerase sigma-24 factor 
Protein accessionNP_793985 
Protein GI28871366 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAACCC AGGAAGAGGA TCAGGCGCTT GTCGAGCGCG TACAGCGCGG CGATACAAGA 
GCATTTGATC TGCTGGTGCT GAAATATCAG CACAAAATTC TAGGGTTGAT CGTGCGGTTC
GTGCACGACA CCCATGAGGC TCAAGACGTT GCACAGGAAG CTTTTATCAA GGCTTACCGT
GCACTCGGAA ACTTTCGCGG CGACAGTGCT TTTTATACAT GGCTGTACCG CATCGCCATC
AACACGGCGA AAAACTATTT GGTATCGCGA GGTCGGCGAC CGCCAGATAG CGATGTCAGG
TCTGAAGACG CGGAGTTCTA CGATGGCGAT CACGGCCTCA AGGACATCGA GTCGCCGGAA
CGTGCATTGC TGAGGGATGA GATCGAGGGC ACCGTCCATC GGACCATCCA GCTTCTCCCG
GAAGATTTAC GTACGGCACT AACTTTACGT GAATTCGACG GTCTGAGTTA CGAAGACATT
GCGAGCGTCA TGCAGTGTCC TGTTGGTACC GTGCGCTCTC GAATCTTTCG CGCTCGGGAA
GCCATCGATA AAGCCCTGCA GCCGTTGTTG CAGGAATCCT GA
 
Protein sequence
MLTQEEDQAL VERVQRGDTR AFDLLVLKYQ HKILGLIVRF VHDTHEAQDV AQEAFIKAYR 
ALGNFRGDSA FYTWLYRIAI NTAKNYLVSR GRRPPDSDVR SEDAEFYDGD HGLKDIESPE
RALLRDEIEG TVHRTIQLLP EDLRTALTLR EFDGLSYEDI ASVMQCPVGT VRSRIFRARE
AIDKALQPLL QES