| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4208 |
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| Symbol | |
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| ID | 1185888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4739826 |
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| End bp | 4742180 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395554 |
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| Product | HAMP domain/GGDEF domain/EAL domain protein |
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| Protein accession | NP_793969 |
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| Protein GI | 28871350 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTTA AGGTCAGCTT TCAGGCGCGT ATCGCAGGGG TCCTGATTGC CCTGTTGCTG
ATTGTGGTGG GTGCAGTCTT TCTCGCGGTC AAGGTTGCAA CCGGCGATGC AGTACGTACC
CAGGCCCAGG CGCAACTGGA AGTGGGTAGC CGGGTGTTCG AGCGCCTGAT CGATTTGCGT
GGCAAGCGCC TGCGGGACGC TGTGCAATTG CTCTCGGCCG ACTTCGGCTT TCGCGATGCA
GTGGCGAGTG CCGACTCGTC GACCATTCGT TCGGTGCTGC TCAACCACGG CAAACGCATC
AACGCCAGCG ACATGTTCCT GCTGGGCATG GATGGCGTGG TGATTGCCAG CACTGAAACC
CAGGTGCCCG AAGGTTCGAG GTTTATCTAC GACCAGGCGC TGCGGGGCGC CAAGCGTTCC
GGTCAGTCAG TGCTTATCGT CCCTGGCGGT GGAACACCCC ACCTGCTGGT AGAAAGTACC
GTTCTGGCAC CGCTGCCCAT TGGCCGTGTG GTCATGGGCT TTACCATCGA CAGCGATATT
GCCGAAGAGC TGCGTTCGCT CAGCGGGCTG GAAGTGTCTT TTCTCACGGT GGAAAACGGT
CAGTCCGGCG ATTTGATCAG TACCCAGCCG CCAGCCATGC ATGCGGGTCT GGTCGAACTG
ATGCGCAGTT CTTCAGAAGG GCAGATGCTG CTCACCGAGC AATCGAACCT TAACTTCCTC
AGTCAGACGC TGATGCTTGC CAAAAGCGAC AATGGCGGTG ACGGACAAGT GATCGCGCTG
CTGCAAAGCC CGCTGGACAA GGCCTATCAA GCGTTTGCGC CGCTGGATGA AAAGATTTTC
TGGATTTCCA TGGCCGCCTT GCTGGCGTCG CTGATCGGCA CGCTGGCGCT GGCTCGAAGT
GTCTCGCTGC CGGTACGCGC ACTGGCGACT GCTGCCAAAC GCATCGGTGA TGGCGACTAT
GAAACGCCGG TCACGATGGC CCGCAGCGAC GAGTTGGGCA TGCTCGCCGA CGCGATCAAC
ACCATGCAGC ACGGCATCGC CGTGCGTGAA GGGCAGTTGG CGCACAACGC GCTGCACGAC
AACCTGACCG GGCTGCCCAA TCGAGCGTTG GTGATGGAGC GTCTGGGCAG TTCGATTGCG
GCAGATCGCC CGGTGGCATT GCTGTACATG GGCATCGAGA ACCTTAAAAC GATCAGCGAG
AGTTCGAATG CAGAGGGCGT TGATCAACTA TTGCGTCAGG TCGGTCAGCG CTTGCAGAGC
AACTCGCGTG CTGGCGATAC CGTGGCACGC CTGAGCGCCA ACGAATTTTT GCTGTTGCTG
GACAACACGG CCAGCGACGG CGCAGTCGGT ATTGCCGATG CCTTGCAACG CTTGCTCAGC
GAGCCGCAGC GTATCGACAA CCATGACTAC GCGCTCGAAT GCTGCATCGG CATCACGGTT
TATCCGGAAC ACGGTGATTC GGCCCAGGAA CTGGTCAACC GTGCGGCGAT TGCACGCAAG
GACGCAACCT TCCTGCCCGG TCGTCTGCAG ATCTACCAGG ACGGGCGTGA TGTTGCTCAC
CAGCGCCAGA TATGTCTGAT CCGCGACCTG CGCAAGGCTC CGCAGAATGG CGAGCTAATG
CTCCATTACC AACCCAAACT GGATATTCGC CAAGGCTATG TTCGTCAGGC TGAAGCCCTG
TTGCGCTGGA CTCACCCACG CTTCGGCAAT GTGTCGCCGG CCGAATTCAT TGTGCTGGCC
GAGCGTACGG GCAGTATCAA CCTGCTGACA ACGTGGGTTA TCGAGGAAGC CATACGGCAA
CTGGCCGAGT GGCGTCAGCG CGGTCTGGTG CTGCAGGTAT CGGTCAACAT TTCCGCGGAC
GACTTGCTGG GCGACGACCT GGCCGGTTAT GTCATGAAAT TGCTCAAGCA GTACGGGCTG
CCTGCTGAAC AACTGGTATT CGAGATCACC GAGAGCGCGG TCATGAGCGA GCCGGAAAAA
GCCCTGGTGG TCCTGCACCG CCTGCGCGAC TGCGGCATCA GCCTGTCAAT CGATGACTTC
GGCACGGGCT ACTCGTCACT GGCGCACTTG AAGCGCTTGC CGGTGCAGGA GCTGAAAATC
GACCAGTCCT TCGTACGTGA TCTGGACGAG ACCAGCGAAG ACGCTGTGAT CGTGCGCTCG
ACCATCGAGA TGAGCCATAA CCTGGGGCTC AAGGTGGTTG CCGAGGGTGT CGAATACCAA
CACAGTCTGG ACCTGCTGCG GCGCTGGCAC TGCGATACGG CTCAGGGTTA CCTGATTAGC
CGGCCGCTGA CGGCGGGTGC ATTCGAGGCA TGGATTGCTA CATACCAGAC ATCACCCAGT
CTTATGGCGC ATTGA
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| Protein sequence | MKFKVSFQAR IAGVLIALLL IVVGAVFLAV KVATGDAVRT QAQAQLEVGS RVFERLIDLR
GKRLRDAVQL LSADFGFRDA VASADSSTIR SVLLNHGKRI NASDMFLLGM DGVVIASTET
QVPEGSRFIY DQALRGAKRS GQSVLIVPGG GTPHLLVEST VLAPLPIGRV VMGFTIDSDI
AEELRSLSGL EVSFLTVENG QSGDLISTQP PAMHAGLVEL MRSSSEGQML LTEQSNLNFL
SQTLMLAKSD NGGDGQVIAL LQSPLDKAYQ AFAPLDEKIF WISMAALLAS LIGTLALARS
VSLPVRALAT AAKRIGDGDY ETPVTMARSD ELGMLADAIN TMQHGIAVRE GQLAHNALHD
NLTGLPNRAL VMERLGSSIA ADRPVALLYM GIENLKTISE SSNAEGVDQL LRQVGQRLQS
NSRAGDTVAR LSANEFLLLL DNTASDGAVG IADALQRLLS EPQRIDNHDY ALECCIGITV
YPEHGDSAQE LVNRAAIARK DATFLPGRLQ IYQDGRDVAH QRQICLIRDL RKAPQNGELM
LHYQPKLDIR QGYVRQAEAL LRWTHPRFGN VSPAEFIVLA ERTGSINLLT TWVIEEAIRQ
LAEWRQRGLV LQVSVNISAD DLLGDDLAGY VMKLLKQYGL PAEQLVFEIT ESAVMSEPEK
ALVVLHRLRD CGISLSIDDF GTGYSSLAHL KRLPVQELKI DQSFVRDLDE TSEDAVIVRS
TIEMSHNLGL KVVAEGVEYQ HSLDLLRRWH CDTAQGYLIS RPLTAGAFEA WIATYQTSPS
LMAH
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