Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4167 |
Symbol | glpF |
ID | 1185847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4693833 |
End bp | 4694690 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637395513 |
Product | glycerol uptake facilitator protein |
Protein accession | NP_793928 |
Protein GI | 28871309 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTATCG CACTAAAACA ACCGACACTC ACCGGGCAAT GTGTGGCCGA GTTTCTTGGC ACCGCCCTGA TGATTTTTTT TGGCACAGGG TGCGTTGCAG CGCTCAAGGT CGCGGGGGCC ACTTTCGGCT TGTGGGAAAT CTGCATCATC TGGGGCATGG CCGTCAGCAT GGGGATCTAC CTCAGCGCGG GCATTTCCGG CGCCCACCTC AACCCGGCCG TCAGCATTGC GCTAAGCCTG TTTGCCGGTT TCGAAAAACG TAAACTGCCG TTTTACATCT CTGCACAGAT CGCCGGCGCG TTCTGCGGAG CGGGCCTTGT GTACCTGTTG TACATCAGCC TCTTTTTCGA CTTCGAACAT GCGCATCACA TCATCCGCGG CAGCGAGCAG AGCCTTGAAC TCGCCTCGGT GTTCTCGACT TACCCTAACC CGGCCATTTC CGTGGGTCAG GCGTTTCTGG TCGAAGTGGT CATCACCACC ATTCTGATGG GCGTGATCAT GGCCTTGGGC GATGACAACA ATGGCTTGCC GCGCGGTGCA TTGGCACCTT TGCTGATCGG CCTGCTGGTT GCCGTTATCG GCAGCGCAAT GGGCCCGCTG ACCGGTTTTG CCATGAACCC GGCACGTGAC TTTGGTCCAA AGCTGATGAC GTTCTTCGCT GGCTGGGGTG AAATAGCCTT CACCGGTGGT CGCGACATTC CTTATTTTCT GGTTCCGATT TTTGCGCCCA TTCTGGGTGC CTGCCTGGGT GCTGCCGGCT ATCGCGCGCT GATTGCGCGT CATCTGCCGA GCACCGTTAC TGTTGAAAAC GAAAAAGAAG CTCCAGTGGT TCGCGGCAAA GTTCAGGCTT CATCTTGA
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Protein sequence | MTIALKQPTL TGQCVAEFLG TALMIFFGTG CVAALKVAGA TFGLWEICII WGMAVSMGIY LSAGISGAHL NPAVSIALSL FAGFEKRKLP FYISAQIAGA FCGAGLVYLL YISLFFDFEH AHHIIRGSEQ SLELASVFST YPNPAISVGQ AFLVEVVITT ILMGVIMALG DDNNGLPRGA LAPLLIGLLV AVIGSAMGPL TGFAMNPARD FGPKLMTFFA GWGEIAFTGG RDIPYFLVPI FAPILGACLG AAGYRALIAR HLPSTVTVEN EKEAPVVRGK VQASS
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