| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4097 |
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| Symbol | fadD-1 |
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| ID | 1185777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4616449 |
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| End bp | 4618140 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637395443 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | NP_793858 |
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| Protein GI | 28871239 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGAAA ACTTCTGGAA GGACAAATAC CCGTCCGGTA TCGCTGCCGA TATCAACCCC
GACGAGTATC CCAATGTCCA GGCGGTCCTG AAGCAGTCCT GCCAGCGCTT CGCCGACAAA
CCGGCGTTCA GCAATCTGGG CAAGACCCTC ACCTACGGTG AGTTGTATGA ACTGTCCGGC
GCGTTCGCGG CCTGGATCCA GCAACACACC GACCTGCAGC CGGGCGACCG TATCGCCGTG
CAGTTGCCCA ACGTGCTGCA ATATCCGATT GCCGTCTTCG GTGCGATTCG CGCCGGATTG
ATCGTGGTCA ACACCAACCC GCTGTACACC GCGCGGGAAA TGGAACACCA GTTCAAAGAT
TCCGGTGCCA AGGCGCTGGT GTGCCTGGCA AACATGGCGC ACCTGGCCGA GAAGGTCGTG
CCCAAAACGC AGATCAAGCA CGTCATTGTC ACCGAAGTCG CCGACATGCT CTCGCCGTTC
AAACGCTTGT TGATCAACAG CGTCATCAAG TACGTGAAGA AAATGGTTCC GGCGTACCAC
CTGCCGCAGT CCGTCAGGTT CAACGACGTG CTCGCCAAGG GCCATGGCCA GCCGGTGACC
GACGTCTCGC CCGGCGCCGT CGATGTCGCC GTGCTGCAAT ACACCGGCGG CACCACGGGC
GTAGCGAAGG GTGCGATGCT CACTCACCGC AACCTGATCG CCAACATGCT GCAATGCAAG
GCGTTGATGG CGTCCGAACT TGGCGAAGGC TGTGAAATCA TCATCACGCC GTTGCCGCTG
TATCACATCT ACGCCTTCAC CTTTCACTGC ATGGCGATGA TGCTGATCGG CAATCACAAC
ATCCTGATCA GCAACCCGCG TGATCTGCCG TCGATGGTCA AGGAACTGTC GAAATGGAAG
TTCAGCGGTT TTGTCGGCCT CAACACGCTG TTTGTGGCCT TGTGCAACAG CGAGGGCTTC
CGCAATCTCG ATTTTTCGGC ACTCAAAGTG ACCTTGTCCG GTGGCATGGC CTTGCAGCAA
GCCGCCGCCG AACGCTGGAA GCAGGTCACG GGCTGTCCGG TCTGCGAAGG CTACGGCATG
ACCGAGACCA GCCCGGTGGC TACGGTCAAT CCTTCTGAGT ACATTCAGAT GGGCACCATC
GGCATTCCCG TGCCGTCAAC GCTGTGCAAG GTCATCGATG ATGTCGGCAA CGAACTGGCA
TTCGGTGAAA CCGGCGAGCT GTGCATCAAA GGCCCGCAAG TGATGAAAGG CTACTGGCAG
CGCCAGGAGG CCACCGACGA AATGGTCGAC AGTGACGGCT GGCTCAAGAC GGGTGACATC
GCGATCATCC AGCCTGATGG CTACATCCGG ATTGTCGATC GCAAGAAGGA CATGATCCTG
ATCTCTGGTT TCAACGTGTA CCCCAACGAA CTGGAAGACG TGCTGGCCAC GCTGCCTGGC
GTGCTGCAAT GTGCAGCGAT CGGTATACCG GATGAAAAAT CGGGCGAATC CATCAAGGTT
TTTGTTGTGG CCAAGCCTGG TGTAACCCTT ACCAAGGATC AGATTATGGT GCACATGCGC
GCCAACCTGA CGGCCTACAA AGTGCCACGC AGCGTGGAGT TTCGCGACGT ACTGCCAACC
ACCAACGTCG GCAAGATCCT GCGTCGCGAA CTGCGTGATG AGGAATTGAA GAAGCTGGGT
TTGAAGAAGT AG
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| Protein sequence | MIENFWKDKY PSGIAADINP DEYPNVQAVL KQSCQRFADK PAFSNLGKTL TYGELYELSG
AFAAWIQQHT DLQPGDRIAV QLPNVLQYPI AVFGAIRAGL IVVNTNPLYT AREMEHQFKD
SGAKALVCLA NMAHLAEKVV PKTQIKHVIV TEVADMLSPF KRLLINSVIK YVKKMVPAYH
LPQSVRFNDV LAKGHGQPVT DVSPGAVDVA VLQYTGGTTG VAKGAMLTHR NLIANMLQCK
ALMASELGEG CEIIITPLPL YHIYAFTFHC MAMMLIGNHN ILISNPRDLP SMVKELSKWK
FSGFVGLNTL FVALCNSEGF RNLDFSALKV TLSGGMALQQ AAAERWKQVT GCPVCEGYGM
TETSPVATVN PSEYIQMGTI GIPVPSTLCK VIDDVGNELA FGETGELCIK GPQVMKGYWQ
RQEATDEMVD SDGWLKTGDI AIIQPDGYIR IVDRKKDMIL ISGFNVYPNE LEDVLATLPG
VLQCAAIGIP DEKSGESIKV FVVAKPGVTL TKDQIMVHMR ANLTAYKVPR SVEFRDVLPT
TNVGKILRRE LRDEELKKLG LKK
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