| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4095 |
|---|
| Symbol | hrpA |
|---|
| ID | 1185775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4611940 |
|---|
| End bp | 4615851 |
|---|
| Gene Length | 3912 bp |
|---|
| Protein Length | 1303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637395441 |
|---|
| Product | ATP-dependent helicase HrpA |
|---|
| Protein accession | NP_793856 |
|---|
| Protein GI | 28871237 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AATCGCCTTC TATCGACCAA CTCCTGAAAA ACCTCGACCA CGCGATGATC
AGCGAACGCC ATCGTTTGCG CCGTCAGTTG CATGAGCTGC GCAAGAAGCC TGACGAGGCG
AAGCTGGCGC AGTGGGTGGC ACGGGTTCAG GCGTCCTGCG CTCAGGTGAC GGCGCGGCGC
GAGAGCGTGC CGGCGATGCG TTATGACGAC AATTTGCCCA TCGCCGCCAA GCGCGACGAG
ATCAAAGAAG CGCTGCTCAA GCATCAGGTG CTGATCATTG CCGGTGAGAC CGGTTCGGGT
AAAACCACGC AGTTGCCAAA GATCTGCCTG GAAATCGGTC GCGGTCAGCA CGGTCTGATC
GGCCATACCC AGCCGCGCCG GATCGCCGCA CGCAGCGTGG CCAGCCGGGT TGCCGAGGAA
ATCGGCACGC CGCTGGGGGC GCTGGTCGGT TATCAGGTAC GTTTCGAGGA TCAGAGCGAC
AGCAACACCC TGATCAAGCT GATGACTGAC GGTATCTTGC TGGCCGAAAC CCAGAATGAC
CGCTTTCTTG AGCGCTACGA CACGATCATC GTCGACGAAG CCCACGAGCG CAGCCTGAAC
ATCGACTTTC TGCTCGGTTA CCTGAAAACC CTGCTGCCGC GCCGCCCGGA CCTGAAAGTC
ATCATCACCT CCGCGACCAT CGACCTGCAG CGCTTTTCCG AGCACTTCAA CGATGCGCCG
GTGATCGAAG TATCGGGTCG TACCTTCCCC GTGGACCTCT GGTATCGCCC GCTGACCAGC
GAGCAGGACG AGGAGGGCAA CAGCGTTGAA GAAGACCTGA CTGTCGATCA GGCGATTCTG
GCCACGCTGG ACGAACTGGC AGCTTTTGAA CGCAGCGAGC GCAAAAGCCC CGGCGATGTG
CTGGTGTTTC TGCCCGGCGA ACGCGAAATT CGCGATGCGG CCGAGGTGCT GCGCAAGGCT
CAGTTGCGGC ACACCGAGAT TTTGCCGTTG TATGCACGTC TATCGCCGGC CGAACAGCAG
CGTATTTTTC AGTCGCATCC CGGTCGTCGC GTGGTGCTGG CGACCAACGT CGCCGAAACC
TCGCTGACCG TGCCGGGCAT TCGTTACGTG ATCGATACCG GTACGGCGCG CATCAGCCGC
TACAGCTATC GCGCCAAGGT CCAGCGCTTG CCGATCGAGG CCGTTTCCCA GGCCAGCGCC
AATCAGCGCA AGGGCCGTTG CGGACGTGTC GAGCCGGGCT TGTGCGTGCG CCTGTACAGC
GAGGAGGATT TCAACGGTCG GCCTGAATTC ACTGACCCGG AAATCCTGCG CACCAACCTG
GCGGCGGTCA TCCTGCAGAT GCTGCACCTG CGCCTGGGCG AGATCACCGA CTTTCCGTTT
ATCGAGCCAC CCGACGGCAA GGCGATCAGC GACGGCTTCA ACCTGTTGCA GGAACTGTCG
GCGGTCAATC GCGAAAATCA GCTGACCCCG CTGGGTCGCC AACTGGCGCG TCTGCCAGTG
GACCCGCGCA TGGGTCGCAT GCTGCTTGAA GCCGCGAAAC AGGGCAGCCT TCAGGAAGTG
CTGATCGTCG CCAGCGCCAT GTCCGTGCAG GACGTGCGTG AGCGCCCGCC CGAGCGTCAG
CAGGCGGCCG ATCAGGCCCA TGCACAATGG AAGGACGCCG ACTCGGACTT CGCCGGGCTG
GTCAATCTGT GGCGCGGTTT TGAAGAGCAG CGCCAGACCC TGACCGCCAG CCCGCTGCGC
AACTGGTGCC GGCGCAATTT TCTGAATTAC CTGCGCCTGC GTGAGTGGCG TGACTCTCAT
CGGCAGTTGA GCCTGATCTG TCGCGACCTG CAACTGACGG TAAACAAGGA GCCGGCCGAT
TACCCGAAAT TCCACAAGGC CATTCTTTCC GGCCTGCTAA GCCAGATCGG ACAAAAGGCC
GACGAAGGCG ATTACCTTGG CGCGCGGCAG CGACGCTTCT GGATTCACCC CTCCTCAGGT
CTGGGCAAGA AGCGCCCGCA GTGGCTGATG GCTGCCGAAT TGGTGGAAAC CACCAAGTTG
TATGCGCGCA TGGTGGCCAA GATCGATTCG GACTGGATCG AGCCGCTGGC CGGGCACCTG
ATCAAGAAGA ATCATTTCGA GCCGCATTGG GAGAAAAAGC GCGGGCAGGT GGTCGCGTTT
GAACAGATCA CCCTGTTCGG CCTGATCGTG GTCGGTCGTC GCCCGGTGCA TTACGGGCCT
GTCGACCCGC AGGTGTCACG CGAGCTGTTC ATCCGCGAAG GCCTGGTGCG TGGCGAAATC
CTCTCTCGGG CCAAGTGCCT GAGCGCCAAT ACACGCTTGC TGGAACAGCT CGACGAGCTG
GAAGCCAAGG CTCGCCGTCG CGATATTCTG GCCGACGAAG ACACCCTGTA CAGCTTCTAC
GAAGCGCGAA TTCCGGCCCA GATTCACCAG ACCGCCACGT TCGACAGCTG GTACAAGACC
GAAAGCCAGA ACAACCCGCA GCTGCTGATC ATGCGCGAAG AAGACGTGTT GGCCCGTGAG
GCCAGCGAAG TGACCGCCGC GCAGTACCCG GACACGCTGA ATCTGGGCGA TTTGAGCCTG
TCGCTGAGTT ACCACTTTGA GCCCAACCAC CCGCGTGACG GCGTGACGCT GCGTGTTCCG
GCACCCTTGC TGCTGTCTTT GCCTGCCGAG CGTCTGGAGT GGCTGGTGCC GGGGTTGCTG
GAAACCAAGT GCATCGCGCT GGTACGCAAC CTGCCCAAGG CGGTGCGCAA GAACTTTGTG
CCGGTCCCGG ATTTCATCAA GGCCGCGCTG CAACGCCTGA CCTTTGGTGA AGGCTCGTTG
CCTCAGGCGC TGGGCCGCGA GCTGTTGCGC ATGACCGGCG TTCGGGTCAG CGACGAGGCC
TGGGCCGAAG CCGCGCAGCA GCTTGAAGGC CATTTGAGGA TGAACCTGGA AATCGTCGAT
GGCAGCGGCA AGTTTCTGGG TGAAGGGCGT GATCTGGCCG AACTGACCGC ACGCTTCGCC
GAGGCGAGTC AGGCTGCTCT CGCGGTGCCG CAAACCGCGA AAAGCCAGCA ACCGGTTCAG
GCCAAGGCCT TTGCTGCGGT GGCACAGAAA ACTCAGCAGA ACATAGCCGG GCTGTCGATG
ACGGTGTATC CGGCGCTGGT CGAAGAGGGC GGCGCGGTCA AGGAAGGCAG GTTCTCTACT
CAGGCCGAAG CCGAGTACCA GCACCGACGC GCCTTGCAAC GCTTGCTGTT GCAACAGTTG
GCGGAACCGG CGAAGTTTCT GCGCAACAAA CTGCCGGGCC AGACCGAGCT GGCCTTGCTG
CACCGCGAAC TGGGGCGTAT TGATGCGCTG GTCGAAGACA TTCTGCTGGC CAGTCTCGAC
AGTTGCGTGC TGGAAGGTGA GGCCGAGCTG CCGCGCGACG GTGCCGGCCT GCTGTCGCTG
GCGGAGCGCA AGCGCGCCGA CTGGACCGAG CACGCCGAGC GGTTCGCGAA GCTGGCGCTG
GAAATCCTCA AGCTGTGGCA CGGTTTGCAA AAGCGCTTCA AGGGCAAGAT CGACCTGTCT
CAGGCGGTTG CGCTCAACGA TATCAAGGCG CAACTGAGCA AACTGGTGTA TCCGGGCTTT
GTGCGGGAAA CCCCGGCGGC GTGGCTCAAA GAACTGCCGC GCTACCTGAA AGCCATCGAA
ATGCGCCTGG AGAAACTGCC AGGCCAGGTG CAAAAAGACC GGGTGTGGAG CATCGAACTG
GCAGGTCTCT GGGCGCAATA CCAGGCACGC GCCGACAAAC ACGCCCAGGA AGGCAAGCGT
GACCCGGAGC TGGCGTTGTA TCGCTGGTGG ATGGAAGAGT ATCGCGTCTC GCTTTTTGCT
CAGCAGTTGG GCACTAAAAT GCCGGTGTCG GACAAACGGT TGAGCAAGCA GTGGAGCCAG
GTGGATAGCT GA
|
|---|
| Protein sequence | MTDESPSIDQ LLKNLDHAMI SERHRLRRQL HELRKKPDEA KLAQWVARVQ ASCAQVTARR
ESVPAMRYDD NLPIAAKRDE IKEALLKHQV LIIAGETGSG KTTQLPKICL EIGRGQHGLI
GHTQPRRIAA RSVASRVAEE IGTPLGALVG YQVRFEDQSD SNTLIKLMTD GILLAETQND
RFLERYDTII VDEAHERSLN IDFLLGYLKT LLPRRPDLKV IITSATIDLQ RFSEHFNDAP
VIEVSGRTFP VDLWYRPLTS EQDEEGNSVE EDLTVDQAIL ATLDELAAFE RSERKSPGDV
LVFLPGEREI RDAAEVLRKA QLRHTEILPL YARLSPAEQQ RIFQSHPGRR VVLATNVAET
SLTVPGIRYV IDTGTARISR YSYRAKVQRL PIEAVSQASA NQRKGRCGRV EPGLCVRLYS
EEDFNGRPEF TDPEILRTNL AAVILQMLHL RLGEITDFPF IEPPDGKAIS DGFNLLQELS
AVNRENQLTP LGRQLARLPV DPRMGRMLLE AAKQGSLQEV LIVASAMSVQ DVRERPPERQ
QAADQAHAQW KDADSDFAGL VNLWRGFEEQ RQTLTASPLR NWCRRNFLNY LRLREWRDSH
RQLSLICRDL QLTVNKEPAD YPKFHKAILS GLLSQIGQKA DEGDYLGARQ RRFWIHPSSG
LGKKRPQWLM AAELVETTKL YARMVAKIDS DWIEPLAGHL IKKNHFEPHW EKKRGQVVAF
EQITLFGLIV VGRRPVHYGP VDPQVSRELF IREGLVRGEI LSRAKCLSAN TRLLEQLDEL
EAKARRRDIL ADEDTLYSFY EARIPAQIHQ TATFDSWYKT ESQNNPQLLI MREEDVLARE
ASEVTAAQYP DTLNLGDLSL SLSYHFEPNH PRDGVTLRVP APLLLSLPAE RLEWLVPGLL
ETKCIALVRN LPKAVRKNFV PVPDFIKAAL QRLTFGEGSL PQALGRELLR MTGVRVSDEA
WAEAAQQLEG HLRMNLEIVD GSGKFLGEGR DLAELTARFA EASQAALAVP QTAKSQQPVQ
AKAFAAVAQK TQQNIAGLSM TVYPALVEEG GAVKEGRFST QAEAEYQHRR ALQRLLLQQL
AEPAKFLRNK LPGQTELALL HRELGRIDAL VEDILLASLD SCVLEGEAEL PRDGAGLLSL
AERKRADWTE HAERFAKLAL EILKLWHGLQ KRFKGKIDLS QAVALNDIKA QLSKLVYPGF
VRETPAAWLK ELPRYLKAIE MRLEKLPGQV QKDRVWSIEL AGLWAQYQAR ADKHAQEGKR
DPELALYRWW MEEYRVSLFA QQLGTKMPVS DKRLSKQWSQ VDS
|
|---|
| |