Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4078 |
Symbol | |
ID | 1185758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4582872 |
End bp | 4584116 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395425 |
Product | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein |
Protein accession | NP_793840 |
Protein GI | 28871221 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.749846 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACACAT CCCTGACAAG CACCAAGCGC TCACTCCCCC GACGGCTGGC CTTGGGCACG GCGGCGCTGT CGCTGATTGC CGCCAGTATT TTCGGTCAGG CAGCCATCGC CGCCGACGCC AACACCACTG GCCTTGCGGT TACCGCGACC GAAGTCACTG TCGGTCAGTT GCACTCGGCC ACCGGCACGA TGGCGATCTC TGAGACCGGT TCGATTCAAG CCGAGCGCCT GGCGATCGAG CAGATCAACG CATCGGGCGG CATTCTCGGT CGGCAGATCA AAGTGGTGCA GGAGGATGGT GCGTCCGATT GGCCGACCTT TGCCGAAAAA GCCAGAAAGC TGCTGGTCGG CGACAAGGTA GCGGCGGTGT TTGGCTGCTG GACATCGGCC TCGCGCAAAG CCGTGCTGCC GGTGTTCGAG AAGGAAAACG GGCTTTTGTA CTACCCGACG TTCTATGAAG GCCTGGAGCA ATCCAAAAAC GTGATTTATA CCGGCCAGGA AGCGACCCAG CAGATTCTTG CGGGCCTGGA CTGGATTGCC AAAGAGAAGG GCGCCAAGAC GTTTTACCTG ATCGGCTCGG ATTACATCTG GCCGCGTACC TCGATGAAGA TCGCTCGCAA GCACATTGAA AACGTTCTGC ATGGCACCGT GGTCGGCGAG GATTATTACC CGCTGGGCAA CACCCAGTTC GGCTCGCTGA TCAACAAGGT CAAGCTGAAG AAACCGGATG TGGTGTTCGC CGCCGTGGTC GGTGGCTCCA ACGTAGCGTT CTACAAACAG CTCAAGGCTG CAGGTGTGAC GTCCACCAAA CAGAACCTGC TGACCTTGTC GGTCACCGAA GACGAACTGC TCGGCATCGG CGGCGAAAAC ATGGAAGGTT TCTACGCCTC CATGAAGTAC TTCCAGAGCC TCGACAACCC CAACAACAAA GCCTTTGTTG ACGCGTTCAA GGCCAAATAC GGCAAGGATT CGGTGATGGG CGACGTGACC CAGGCTGCCT ACCTCGGCCC ATGGTTGTGG AAAGCCGCAG TCGAGAAAGC CGGCAGCTTT GATGTCGACA AGGTGGTCGC GGCATCCCCG GGTATCGAGC TCAAGACGGC GCCTGAAGGC TACGTGAAAG TTCACGAAAA CCATCACCTG TGGAGCAAGA CGCGCATCGG TGAGGTTCAA GCCAATGGCC AGTTCAAGGT GATCTACGAA TCTGACCTGA TCGAGCCCAA CCCTTTCCCG AAAGGCTACC AGTAA
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Protein sequence | MDTSLTSTKR SLPRRLALGT AALSLIAASI FGQAAIAADA NTTGLAVTAT EVTVGQLHSA TGTMAISETG SIQAERLAIE QINASGGILG RQIKVVQEDG ASDWPTFAEK ARKLLVGDKV AAVFGCWTSA SRKAVLPVFE KENGLLYYPT FYEGLEQSKN VIYTGQEATQ QILAGLDWIA KEKGAKTFYL IGSDYIWPRT SMKIARKHIE NVLHGTVVGE DYYPLGNTQF GSLINKVKLK KPDVVFAAVV GGSNVAFYKQ LKAAGVTSTK QNLLTLSVTE DELLGIGGEN MEGFYASMKY FQSLDNPNNK AFVDAFKAKY GKDSVMGDVT QAAYLGPWLW KAAVEKAGSF DVDKVVAASP GIELKTAPEG YVKVHENHHL WSKTRIGEVQ ANGQFKVIYE SDLIEPNPFP KGYQ
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