Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4068 |
Symbol | |
ID | 1185748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4574899 |
End bp | 4575966 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395415 |
Product | transcriptional regulator, AraC family |
Protein accession | NP_793830 |
Protein GI | 28871211 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.103563 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCCTA CTGGTAAACG CAGTTCGGCT CTGGACTACT CGGTCTGGCC GGGATGGCGG GTATTGATGC AGGATGCCGG ACTGGCGACG GCGCCCGTCT TGCGCCGCGC GCAATTGCCG GGTGATTTGT TCACACGACA AAATGTTCGT CTGGACTCGG CACACTTCTT CAAGCTTTGG GAGGCGATCG AAGCCGAGGC TGCATCCATC AATGCGGACT TGCCGGCGCC TTTGCAAATT GCCAAGGTCA TGTCTTCGGA CTGGTTTGAT CCAGAACTTT TTGCCGCGCT GTGCAGCGCC AACATGGCCG ACGCCCTGGA GCGCATTGCC AAATACGTAA GGTTGATCGC GCCCATGGTC ATTCGGGTCG TGCCGACCAA AGCGCACACC ACCGTCACCA TGGATTTTCT GGACGCCTGC GAACCGCCCA CTGTGTTTCT GGCATTCAAG CTCGTGTTTT TTGTTCAATT GGCCAGACTG GCGACACGCA GTCCTGTGCA GCCCTTGCAG GTTAACTGGC CGTCGCCATC GACGCCCGGC CCGGACTTGC AGGCCTATCA AGCGTACTTC GGCATTCCCG TGACTCACGC GCCACAGGCC AGCCTGGTAT TTGCAGCGGC GGACGTAGAG CGCCCGTTTC TGACGGAAAA CCACAAGATG TGGTTGTTCT TCGAGCCCGG TCTGCGACAG CGATTGTCTG ACCTGGACAG GACATCCGGA ATGGTCGAGC GGGTACGCAG TGCGCTGCTT GAGTCTTTAC CGGCAGGCGC GGTATCGATG CAGCAGATCA GCCGAAAACT GGGCGTCAGT ACCCGCACTC TGCAGCGCAG GTTGCAGGAT GAAGGGACGA CGTTTCAGCA GACGCTCGAT ACGCTGCGCG ATTCCCTGGC ACGCCACTAC CTGCGCAGCA CAGCCATGTC GAGTGCGCAG ATATCGTTTC TTCTGGGCTT CGAGGACGCC AATTCCTTTG CTCGCGCATT CCAGTCATGG ACAGGCAGTA CGCCGGGCAA GGTGAGGGCT GAAATGGATA ACTCCCGTCA TCCATCGACC GCGCGTTCAG GCGAATAA
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Protein sequence | MSPTGKRSSA LDYSVWPGWR VLMQDAGLAT APVLRRAQLP GDLFTRQNVR LDSAHFFKLW EAIEAEAASI NADLPAPLQI AKVMSSDWFD PELFAALCSA NMADALERIA KYVRLIAPMV IRVVPTKAHT TVTMDFLDAC EPPTVFLAFK LVFFVQLARL ATRSPVQPLQ VNWPSPSTPG PDLQAYQAYF GIPVTHAPQA SLVFAAADVE RPFLTENHKM WLFFEPGLRQ RLSDLDRTSG MVERVRSALL ESLPAGAVSM QQISRKLGVS TRTLQRRLQD EGTTFQQTLD TLRDSLARHY LRSTAMSSAQ ISFLLGFEDA NSFARAFQSW TGSTPGKVRA EMDNSRHPST ARSGE
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