| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4041 |
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| Symbol | |
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| ID | 1185721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4547438 |
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| End bp | 4550719 |
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| Gene Length | 3282 bp |
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| Protein Length | 1093 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395388 |
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| Product | host specificity protein J, internal deletion |
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| Protein accession | NP_793803 |
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| Protein GI | 28871184 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4733] Phage-related protein, tail component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0753321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAGTG GCGTTAAAAA GATTGCCCAG GTCGCCGTAG GCGCTGTGAT TGGCTTCGTC
CAAGGTGGCC CGGTGGGCGC TGCAATTGGA GCTGGCCTGG CCTTCTACGC TGCGTCCCAG
CAGGAAAAGC TAAACACCAA ATCCCCGTTG CGCGACAACG AGCCGTCCGC TCAGACGGTA
AGGTCGTCGA AAGCGCCGAT CCGGTTCGTC CTCGGTCGTG TATCCACCGG TGGCGTTCTG
GTCTGGGCGC AGGAGCAGTC CGGCACCCTC ACAGAGGGCG AGCAAATTCA CCTTGTGTAC
GTGCTGTGTG AAGGCGCGAT CGATGCCTTG GAGAACATCT ACCTCGGAGA GGAAGAGATC
GGCTCGTTCG GTGAGTTCGC CAGCTATGAG CTGATCGTCA ACCCGACAGA AGTTAATGCA
TTCCTCAAGG CAAACTGCCA GGACTGGAAA GACAGCCAGA TCGGGCGCGG CCTGTCGTAC
GTGCGCATCA CTCTGAAGTA CAGCGCCGAG AAGTTCCCGT CCGGCATCCC TGACACCCGC
TTTGTGGTCC GTGGCCGGAA TGACATTTAC GACCCGCGCA CCGGCAACAA CATCTATACC
GCCAACACCG CACTGCACAT CCTCTGGTTC CTGCGTAACC GCTGCAACGT CCCAGACGAC
GAGATCATTT TCGAGACATT CGCCAGCGCA GCAAACGTCT GCGATGAAGC ACTGACCAAT
GCCGACGGCT CGGTCAGCCA GCGCTATCGC ACTTCTTGCG TGATTGGTGC TGACGAGCAA
CGTCCGGGCG TACTGCAGAA GCTGGAAGCG TCATGCGCCG GCAAGTTGAT CCGCGTCGGC
GGCCGCTGGA TGCTCCAGGC AGGCGCCTAC TACGGCCCGT ATGACTTCGA GATCACCGAA
GACATGATCA TTGGCACCGT ATCCGGCAGT ACCGAGTCGA CGAACGATTC CGCCATCAAC
ACGGTGCGCG GCACGTTCAT CGATCCTGAG CAGTCCTGGA CCGAGACCGA TTACCCAGAA
GTCAGCGTTT CCGAATGGAT TCTTGAGGAC GGCGGCGAAG CTGCAGAGAC GATGACGTTC
TCGTATGTGA CCGACGCGTA TCAGCCGCAG CGCTTGGCGA ATATCTCCCT GCGCCAGCGT
CGGGCTGGCG GGACAATCAG CCTGCCGATG AATTTCTCGG GCTACAACTG CCGGCCTGGC
CGCGTAGTGC GTGTGAACCT GCCGTCACTG AACGTCCTTG GCGAGTTCAT CGTCTCCGAC
TGGTCTATGG GTGACAGTGA AGGATGCACG GTTCAGGTCA AGCAGTACGA GGCGGCAATC
TTCGATGATG CCGTGGGCCA GCCTTACAAC CCGCTGGGGT TCATCAACCT GCCAAGCGGC
GGGCTTGGCT CGCCCACCGG GCTTGCATGG GCTCCTGGCG ATGCTGCTGA GGTGGTGCAG
GGCGTACTGT CGTGGGTTCC ACCGCAGGGC ATCGTCACCT CCTATGTGGT CACGATCCGC
CAGGGCGGTG GTGTCGCGCA GTCACGCTCG GTGCCCGCGA CGGCCAACAC GCTTGCCATC
AACGGATTGG CGTCAGGCAC ATACACAATG AGCGTGGCCG CCTTGGGCCC AATGGCCCGA
TCTGGCGAAG CAACTATCTC GGTGAGTATT CAGGGTCCGC CAATCCCGGA ATCCTGCGTC
GTGCAATCTT CGATCGACAG CATCGTGCTG ATCCCGCAGA ACCCGAACCA TGGCCTGAAC
GGTGGCACCT ACGAGTACTT CTTCAGCACC AACCCCAACG CTACATCGGG CACGGCGCAG
TACCTGGGGC AGGGCCTGTC GTTCACTCAC AACGATTTGG CGTTTTACAC AAACTATTAT
TACTTCATCC GCTCGACCAA CGCATATGGG AAGAGCGCCT TTCTTTATGT GCCTACGTCG
ACATCAAACG ATGTGTCGGC CTATCTGTCT GCTCTGGCCG GCAAGATCAG CAAGACCGAG
CTTGCGCAGA ACCTGCTTTC AGAGATTGAG CTGATTAGTG GCGACGGTGA CGGATCGGTT
AATGAGCGCC TGGCTGAGCT CAAGGCCGAG ATCGGAGAAA TCACCGACGC GCTGGTCTAT
GTGCCGACTG ACGCCTATGT CCGCGACAAC ACCGTGCGCG TGGGTGACAA CCTCTGGACG
GCCATTGCAG CGGTGCCTGC GGCTGCCAAT GGATCGAACG GCCCGCCGAA CCCGGCTTAC
TGGGTGAACA CAGGCCAGTC CATTCGCGCC GCTAACGCCC AGGCTGATCA GGTTTCCAAA
AACACAGCCA ACATCGAGAC GGTGAACGGC AGGACCACGG CGACCGCAAG TCAGCTCCAG
GCAGTGCAGG CGCAGTACCG GGCCGACAGC GGGGAAGGCG ATCTGCTCGA TGCGCTCAGA
GGTTGGGACA GCACGGCCAG CGCGGCACAG GAAGTGAAGA TCAGGGCGGA AGAGGATTTC
GCCCAGGCTC AGCGCACCAC GACTCTGCAA GCGCGTGTCG GCACCAATGA GGCACGAATC
ACCACCGTCG AAACGACGAC TGCCACGGAC CGCGAGGCGA CTGCCCAGCG GATTACGGCA
ATCGATTCTC GCGTAGGTAC GAGCGAATCG AAGATCACGA CGATTGAGTC AACCGCAAAC
ACGGACCGGC AGGCCACCGC TCAACAGATA CAGACGCTGA CCTCGTCCGT CGGTAGCAAT
CAGGCCGCCA TCCAGTCTGA AGCAACCACC AGAGCCAACG CAGACGGCGC GCTGTCCACG
CGAGTGGATG GGGTTCAAAC AACTGCTAAT AACGCCAGTG CTGCGGTTCA GACCGTAAGC
ACAGCCCAGG CGAGCACTGA CGGCAAGCTG ACGGCGATGT ATACCGTCAA ATTGCAAGTC
AACTCCAACG GCCAGTACGT CATGGCCGGG ATAGGCGCAG GGATTGAGAA TGTTGGCGGT
GTGCTGCAAA GCCAGATCCT CATGTCGGCT GATCGGTTTG CGCTGGTGAA CACGTTAGCG
GGTGGTGCTA TTTCGACGCC TTTCGTTGCA CAGAACGGCC AGTTGTTCCT TGGTCCGACG
TTCATCCAAG ACGGCACGAT CACCAACGCC AAGATTGGGA GTTACATCAG TTCGACCAAT
TACCTGGCCG GGCAGAGCGG CTGGATTCTG AGCAAAGACG GTACGTTCGA AATCAACTCA
CCACTTGCCG GGGGAGGCAG GCAGGTCATT AACGGTCAAG GCGGCAAGGT TTATGACGAG
CGAGGCCAGT TGCGCTACCA GTGGGGGAAT TTAGCCGCAT GA
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| Protein sequence | MPSGVKKIAQ VAVGAVIGFV QGGPVGAAIG AGLAFYAASQ QEKLNTKSPL RDNEPSAQTV
RSSKAPIRFV LGRVSTGGVL VWAQEQSGTL TEGEQIHLVY VLCEGAIDAL ENIYLGEEEI
GSFGEFASYE LIVNPTEVNA FLKANCQDWK DSQIGRGLSY VRITLKYSAE KFPSGIPDTR
FVVRGRNDIY DPRTGNNIYT ANTALHILWF LRNRCNVPDD EIIFETFASA ANVCDEALTN
ADGSVSQRYR TSCVIGADEQ RPGVLQKLEA SCAGKLIRVG GRWMLQAGAY YGPYDFEITE
DMIIGTVSGS TESTNDSAIN TVRGTFIDPE QSWTETDYPE VSVSEWILED GGEAAETMTF
SYVTDAYQPQ RLANISLRQR RAGGTISLPM NFSGYNCRPG RVVRVNLPSL NVLGEFIVSD
WSMGDSEGCT VQVKQYEAAI FDDAVGQPYN PLGFINLPSG GLGSPTGLAW APGDAAEVVQ
GVLSWVPPQG IVTSYVVTIR QGGGVAQSRS VPATANTLAI NGLASGTYTM SVAALGPMAR
SGEATISVSI QGPPIPESCV VQSSIDSIVL IPQNPNHGLN GGTYEYFFST NPNATSGTAQ
YLGQGLSFTH NDLAFYTNYY YFIRSTNAYG KSAFLYVPTS TSNDVSAYLS ALAGKISKTE
LAQNLLSEIE LISGDGDGSV NERLAELKAE IGEITDALVY VPTDAYVRDN TVRVGDNLWT
AIAAVPAAAN GSNGPPNPAY WVNTGQSIRA ANAQADQVSK NTANIETVNG RTTATASQLQ
AVQAQYRADS GEGDLLDALR GWDSTASAAQ EVKIRAEEDF AQAQRTTTLQ ARVGTNEARI
TTVETTTATD REATAQRITA IDSRVGTSES KITTIESTAN TDRQATAQQI QTLTSSVGSN
QAAIQSEATT RANADGALST RVDGVQTTAN NASAAVQTVS TAQASTDGKL TAMYTVKLQV
NSNGQYVMAG IGAGIENVGG VLQSQILMSA DRFALVNTLA GGAISTPFVA QNGQLFLGPT
FIQDGTITNA KIGSYISSTN YLAGQSGWIL SKDGTFEINS PLAGGGRQVI NGQGGKVYDE
RGQLRYQWGN LAA
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