| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3981 |
|---|
| Symbol | aspS |
|---|
| ID | 1185657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4486896 |
|---|
| End bp | 4488671 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395328 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | NP_793745 |
|---|
| Protein GI | 28871126 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0111519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGCA GCCATTATTG CGGCCAACTG AACGAGAGTC TGGAAGGCCA GGAAATTACC
CTTTGCGGAT GGGTCCACCG TCGTCGTGAC CACGGGGGCG TTATCTTCCT TGATATCCGC
GACCGTGAAG GCATGGCTCA GGTAGTGTTC GACCCCGATC GTGCAGACAG CTTCGCTGCC
GCCGACCGTG TGCGCAGCGA GTACGTGGTC AAGGTCGTCG GCAAGGTCCG CGCCCGTCCT
GCCGGTGCCG TCAACGCCAA CATGGCATCC GGTGCCATCG AAGTGCTGGG CTACGAGCTC
GAAGTACTGA ACGAGTCCGA AACTCCGCCG TTCCCGCTGA ACGAATATTC CGATGTCGGC
GAAGAAACGC GCCTGCGTTA TCGCTTCATC GATCTGCGTC GTCCGGAAAT GGCTGAAAAG
CTGCGTCTGC GTTCGCGTAT CACCACCAGC ATTCGTCGTT ATCTGGATGA AAACGGCTTT
CTCGATGTTG AGACGCCGAT CCTGACCCGT GCCACACCGG AAGGCGCTCG TGACTATCTG
GTCCCTAGCC GCACACATCC GGGCAGCTTC TTCGCGCTGC CGCAATCGCC TCAGTTGTTC
AAGCAACTGC TGATGGTGGC CGGCTTCGAC CGCTATTACC AGATCGCCAA GTGCTTCCGC
GACGAAGACC TGCGTGCTGA CCGTCAACCG GAATTCACCC AGATCGACAT CGAGACCAGC
TTCCTCAACG AGGAAGACAT CATTGGTCTG ACCGAGAAGA TGGTTCGCCA GTTGTTCAAG
GAAGTTCTGA ACGTTGAGTT CGGTGACTTC CCGCACATGA CCTTCGAAGA AGCCATGCGT
CGCTACGGTT CCGACAAGCC GGACCTGCGC AACCCGCTGG AACTGGTAGA CGTCGCCGAT
CAGCTCAATG CCGTGGAATT CAAGGTGTTT AGCGGTCCGG CCAACGATCC GAAAGGGCGT
GTTGCCGCAC TGCGTGTACC GGGCGCTGCC AGCATGGCGC GCAGCCAGAT CGACGACTAC
ACCAAGTTCG TCAGCATCTA CGGCGCCAAA GGCCTGGCCT ACATCAAGGT CAACGAGCGT
GCGAAAGGGC CTGAGGGCTT GCAGTCGCCG ATCGTCAAGT TCATCCCTGA AGAAAACCTG
AACGTCATCC TTGATCGCGT GGGCGCGGTC GATGGCGATA TCGTTTTCTT TGGTGCGGAC
AAATTCAAGG TCGTCAGCGA AGCTCTGGGC GCGCTGCGGA TCAAGATCGG TAACGACCTC
AAGCTGCACA CCTGCGAGTG GGCGCCGATG TGGGTCGTCG ACTTCCCGAT GTTCGAAGAA
AACGACGACG GCAGCTTCTC GGCGTTGCAC CACCCCTTCA CTGCACCCAA GTGCACGCCT
GAAGAGCTGG AAGCCAACCC TGCCACGGCG CTTTCCCGTG CCTACGACAT GGTGCTCAAC
GGCACCGAAC TGGGTGGCGG TTCGATCCGT ATCCACCGCA AGGAAATGCA ACAGGCGGTA
TTCCGTCTGC TGGGCATCGC CGAAGACGAG CAGCAGGAGA AGTTCGGCTT CCTGCTCGAT
GCCTTGAAGT ACGGTGCACC GCCGCACGGT GGCCTGGCAT TCGGTCTCGA CCGCCTGGTC
ATGCTGATGA CCGGCGCGCA ATCGATTCGT GAAGTCATCG CCTTCCCGAA AACCCAGAGC
GCGGCCGATG TCATGACCCA GGCGCCTGGC GTTGTCGATG CCAAAGCGTT GCGCGAGTTG
CACATCCGTC TGCGCGAGCA GCCAAAAGCC GAGTGA
|
|---|
| Protein sequence | MMRSHYCGQL NESLEGQEIT LCGWVHRRRD HGGVIFLDIR DREGMAQVVF DPDRADSFAA
ADRVRSEYVV KVVGKVRARP AGAVNANMAS GAIEVLGYEL EVLNESETPP FPLNEYSDVG
EETRLRYRFI DLRRPEMAEK LRLRSRITTS IRRYLDENGF LDVETPILTR ATPEGARDYL
VPSRTHPGSF FALPQSPQLF KQLLMVAGFD RYYQIAKCFR DEDLRADRQP EFTQIDIETS
FLNEEDIIGL TEKMVRQLFK EVLNVEFGDF PHMTFEEAMR RYGSDKPDLR NPLELVDVAD
QLNAVEFKVF SGPANDPKGR VAALRVPGAA SMARSQIDDY TKFVSIYGAK GLAYIKVNER
AKGPEGLQSP IVKFIPEENL NVILDRVGAV DGDIVFFGAD KFKVVSEALG ALRIKIGNDL
KLHTCEWAPM WVVDFPMFEE NDDGSFSALH HPFTAPKCTP EELEANPATA LSRAYDMVLN
GTELGGGSIR IHRKEMQQAV FRLLGIAEDE QQEKFGFLLD ALKYGAPPHG GLAFGLDRLV
MLMTGAQSIR EVIAFPKTQS AADVMTQAPG VVDAKALREL HIRLREQPKA E
|
|---|
| |