Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3980 |
Symbol | |
ID | 1185656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4486035 |
End bp | 4486781 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395327 |
Product | hypothetical protein |
Protein accession | NP_793744 |
Protein GI | 28871125 |
COG category | [S] Function unknown |
COG ID | [COG0217] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.465534 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGGTC ATTCTAAGTG GGCGAACATC AAGCACCGCA AAGAGCGTCA GGATGCCAAA AAAGGCAAGA TTTTCACCAA ATGGATTCGT GAGCTGACCG TTGCTGCGCG TCAGGGCGGT GGCGATCCGG GTTCCAATCC GCGTCTGCGT CTGGCGCTGG ACAAGGCGCT TGGTGCGAAC ATGACCCGTG ACACCATTGA TCGCGCCGTG GCGCGTGGCG TGGGTGCATC AGATGGCGAC GATGTCGAAG AGCTGGGTTA CGAGGGCTAC GGCCCGGGTG GCGTAGCGGT CATGGTCGAA ACCATGACCG ACAACCGCAA CCGCACCGCG GCGGCGGTTC GCCATGCGTT CACCAAGTGC GGTGGTAATC TTGGCACCGA CGGCTCTGTT GCCTACCTGT TCGATCGCAA GGGCCAGATT TCCTTTGCTG CTGGCGTCGA TGAGGATTCC CTGATCGAGG CCGCCATGGA AGCCGATGCC GACGATGTCG TGACCAACGA CGACGGCTCG ATCGACGTGT TCACATCGTT CTCCGGGTTC TACGCGGTTC GTAACGCTTT GGAGGCGGCC GGTTTCATGG CTGCAGATGC AGAAATCGTC ATGTTACCGA CCACCAGTGC TGTGCTCGAT CTGGAAACCG CTGAAAAAGT CCTCAAGCTG ATCGACATGC TTGAAGACCT GGATGACGTG CAGAACGTGT ATTCAAATGC GGAAATCCCC GATGAAGTCA TGGAGCAACT GGGCTGA
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Protein sequence | MAGHSKWANI KHRKERQDAK KGKIFTKWIR ELTVAARQGG GDPGSNPRLR LALDKALGAN MTRDTIDRAV ARGVGASDGD DVEELGYEGY GPGGVAVMVE TMTDNRNRTA AAVRHAFTKC GGNLGTDGSV AYLFDRKGQI SFAAGVDEDS LIEAAMEADA DDVVTNDDGS IDVFTSFSGF YAVRNALEAA GFMAADAEIV MLPTTSAVLD LETAEKVLKL IDMLEDLDDV QNVYSNAEIP DEVMEQLG
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