Gene PSPTO_3971 details

Gene Information

• Locus tag: PSPTO_3971
• Symbol: pal
• ID: 1185647
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 4478908
• End bp: 4479408
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637395318
• Product: peptidoglycan-associated lipoprotein
• Protein accession: NP_793735
• Protein GI: 28871116
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
• TIGRFAM ID: [TIGR02802] peptidoglycan-associated lipoprotein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.17828
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAATGC TGAAGTTTGG TAAATTTGCT GCGCTGGCTC TGGCCATGGC TGTAGCTGTA 
GGTTGCTCGT CCAAAGGCGG CGACAATGCC GGTGCAGGCG GTGCTGTTGA TCCTAACGCT 
GGTTACGGCG CCAACACCGG TGCAGTTGAC GGCTCCCTGA GCGAAGAAGC TGCTCTGCGC 
GCAATCACCA CCTTCTACTT CGAATACGAC AGTTCGGACT TGAAGCCAGA AGCCATGCGC 
TCCCTGGACG TGCACGCCAA AGACCTGAAA GCTAACGGCG CTCGCGTTGT TCTGGAAGGC 
AACACTGACG AACGTGGTAC TCGCGAGTAC AACATGGCAC TGGGCGAGCG TCGTGCGAAA 
GCCGTTCAAC GCTACCTGGT TCTGCAAGGT GTTTCCCCAG CTCAGCTGGA ACTGGTTTCC 
TACGGCGAAG AGCGTCCAGT TGCTACCGGC AACGACGAGC AGTCCTGGGC TCAAAACCGT 
CGCGTCGAAC TGCGTAAGTA A 

 

Protein sequence

MEMLKFGKFA ALALAMAVAV GCSSKGGDNA GAGGAVDPNA GYGANTGAVD GSLSEEAALR 
AITTFYFEYD SSDLKPEAMR SLDVHAKDLK ANGARVVLEG NTDERGTREY NMALGERRAK 
AVQRYLVLQG VSPAQLELVS YGEERPVATG NDEQSWAQNR RVELRK