| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3958 |
|---|
| Symbol | |
|---|
| ID | 1185633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4465247 |
|---|
| End bp | 4466680 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395306 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_793724 |
|---|
| Protein GI | 28871105 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTT TGCGTCCTAC ACTGCTCACC CTCGCCTGCC TGTTCGCCAC ACACGGCATC
GCTGACGATC TTCCGTCACT GGGCGACTCC AGCTCATCGA TTGTTTCCCC GGAGCAGGAA
CACCGCCTGG GCCGTGCATG GCTGGGTTTA CTGCGTGGTC AGGTCGGGCA ACTGTCGGAC
CCGCAACTCA AGGACTACGT CGAGACATCG GTCTATCGTC TGGCCGAAAC CAGCCAGGTT
CAGGACCGGC GACTTGAATT TATCCTCATC AATAGCCCGC AGCTCAACGC CTTCGCAGCA
CCTGGCGGGA TCATCGGCGT CAACGGCGGC CTGTTTCTCA ACGCTCAGAC CGAGGGGGAA
TACGCATCGG TTCTGGCTCA CGAACTGGCT CACTTGTCCC AGCGCCACTT CGCCAGAGGC
ATAGAAGCCC AGCAGCGCAT GCAGGTGCCC GTAATGGCGG CGATGCTGGC GGGTATTGTC
ATGGCGGCTG CGGGTGCCGG TGATGCCGGT ATCGCGACCA TCGCCGGCTC ACAGGCGGCT
GCGATTCAGG AGCAGCGCCG GTTCTCGCGT CAGAACGAGC AGGAAGCTGA CCGCATCGGC
ATTCTCAACC TGGAAAAAGC CGGCTATGAC CCGCGCAATA TGCCGACCAT GTTCGAGCGT
CTCATGCGCC AGTACCGATT CGACGCCAGG CCTCCGGAGT TTCTGTTGAC TCACCCGGTC
AGCGAATCGC GTATCGCCGA CACGCGCAAC CGCGCCGAGC AGGCCAAACC GGGCGGCAAG
GAAGACAGCG TGCTGTACCA ACTGATGCGC GCGCGGGTGG CGCTTATCTA TGAAGAAACG
CCAGGCATTG CCGCCAAGCG CTTCCGTGCC CAATTGGTTG AAAATCCGAA ATCCGAGCCC
GCGCGCTACG GTCTGGCCAT CGCGCAGATC AAGGGTGGAC AGCTCAATGA AGCACGGGAA
AGCCTAAAGC CTCTGCTGGA AAAATCGCCG AACGACATCA CTTACAACCT GACGCAAATC
GACCTGGACA TCACCAACAA CCGGCTGGCG GATGCACAGC AACGGGTCGA TCGCATGTTG
ACGCTGTACC CGACCAGTTA CCCGCTCAAC GATGTGCGTA TTGATGTGCT GCTCAAGCAG
AACCGTACCG CCGAAGCCGA AAAAAGCCTT GAAGCGTTGC TCAAGACCCG TCCCGATGAT
CCGGACATCT GGTACGTGGT GGCAGAAACC CGTGGCCTGA ACGGCAACAC GGTCGGCCTG
CATCAGGCCC GTGCCGAGTA CTTCGCGCTG GTCGGCGACT TCCGTCAGGC GATCCAGCAA
CTGGACTTCG CCAAACGCCG GGCCGCCAAC AACTTCCAGC TGGCCTCGCG AATCGATGCC
CGGCAAAAGG ATTTGATCGA GCAGGAACGC ATGGTCAAGG ACATGATGAA CTGA
|
|---|
| Protein sequence | MNFLRPTLLT LACLFATHGI ADDLPSLGDS SSSIVSPEQE HRLGRAWLGL LRGQVGQLSD
PQLKDYVETS VYRLAETSQV QDRRLEFILI NSPQLNAFAA PGGIIGVNGG LFLNAQTEGE
YASVLAHELA HLSQRHFARG IEAQQRMQVP VMAAMLAGIV MAAAGAGDAG IATIAGSQAA
AIQEQRRFSR QNEQEADRIG ILNLEKAGYD PRNMPTMFER LMRQYRFDAR PPEFLLTHPV
SESRIADTRN RAEQAKPGGK EDSVLYQLMR ARVALIYEET PGIAAKRFRA QLVENPKSEP
ARYGLAIAQI KGGQLNEARE SLKPLLEKSP NDITYNLTQI DLDITNNRLA DAQQRVDRML
TLYPTSYPLN DVRIDVLLKQ NRTAEAEKSL EALLKTRPDD PDIWYVVAET RGLNGNTVGL
HQARAEYFAL VGDFRQAIQQ LDFAKRRAAN NFQLASRIDA RQKDLIEQER MVKDMMN
|
|---|
| |