Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3952 |
Symbol | |
ID | 1185627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4460298 |
End bp | 4461416 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395300 |
Product | lipoprotein, putative |
Protein accession | NP_793718 |
Protein GI | 28871099 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3317] Uncharacterized lipoprotein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0490104 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGCGAT TGGCCGGACT ATCCGCACTT GCTCTTATTA TCTCCAGCAC CAGCGGTTGC GGTTGGCTCT GGGGTGAAGA TGGCTACTTC CGTGATCGCG GTAGCGATTA CCTTCAGGCA ACCCAGACCC CTCCCATGCA GGTGCCTGCC GATGTTTCCG GCGTCAAGCG CCTGGATCCG TTGTTGCCGA TCCCGCGTAA CGTGGCTGAC AGCACCCAGA AAGACGGTGA ATACACCGTT CCTCGTCCTC TGCCGCTGGC CTCGACGTCC GAGTCGAGTG ATTTCAGCTT GCAGAAGAGC GGTGATTCGC ACTGGATTCT GGCCCAGCGC CAGCCAGCCG AAGTCTGGCC GGTGGCCCAC CAGTATTTTG AAGACAATGG TTTTCGCATC GCTGAAGAGC GTCCGCAGAC GGGCGAATTC AGCTCTTCGT GGCAGCGTCT TGATGAGCTA TCTGCCTCGG TGGCCAAGCG TCTGAGCGCG GCGGGTGTCG CGGCCGACGC AGAAACCCGT GTGCGGGTTC GCATCGAGCC AGGCGTGCAG CGCAACACCA GCGAAGTTTA CGTGGTCAGC GTCGAGCGTC CTGCCGGCAG CACGGCCGAT GTGGCGTTCC CGACACGCAC CACCAACCTG GGGCTCGATG CAGCACTGAC CGATGACCTG CTGGCCAGCA TGGGCCGCAA CGCCGAGAAG GGCGGTTCGA TTTCCCTGCT GGCAGCGCGT GACTACGATA CCCCGAGCCG TGTTGCCTTG AGCGAAGACG GCAGCGGCAA CCCGGTCTTG AACCTCGGTG CCGATCTGGA CCGTGCGTGG TCGAGCGTCG GCCGTGCGCT GGATCAGGGC GACTGGCGTG TCGAGGACAT CAACCGTAGC CTGGGCCTGT ACTACATCAA CCTGGCCGAA AAAGCCAAAA CGCCTGAGAA CGAGCCTGGT TTCTTCGGTC GCATGTTCGG CAGCAAGTCG AGCAAGGAAG AGATCGATGC CCGCGCCGAG CGTTATCAGG TGCGCCTGAG CAAGGTCGGT GACAACGTTC AGGTGACCGT CGAGAAGAAC ATCAACACTG TTGCACCTGC GGATATCGCT CGTCGGGTGT TGAGCGTTAT TCAAGATAAC CTGGGTTAA
|
Protein sequence | MKRLAGLSAL ALIISSTSGC GWLWGEDGYF RDRGSDYLQA TQTPPMQVPA DVSGVKRLDP LLPIPRNVAD STQKDGEYTV PRPLPLASTS ESSDFSLQKS GDSHWILAQR QPAEVWPVAH QYFEDNGFRI AEERPQTGEF SSSWQRLDEL SASVAKRLSA AGVAADAETR VRVRIEPGVQ RNTSEVYVVS VERPAGSTAD VAFPTRTTNL GLDAALTDDL LASMGRNAEK GGSISLLAAR DYDTPSRVAL SEDGSGNPVL NLGADLDRAW SSVGRALDQG DWRVEDINRS LGLYYINLAE KAKTPENEPG FFGRMFGSKS SKEEIDARAE RYQVRLSKVG DNVQVTVEKN INTVAPADIA RRVLSVIQDN LG
|
| |