Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3898 |
Symbol | |
ID | 1185571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4409447 |
End bp | 4410394 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395250 |
Product | sodium/bile acid symporter family protein |
Protein accession | NP_793669 |
Protein GI | 28871050 |
COG category | [R] General function prediction only |
COG ID | [COG0385] Predicted Na+-dependent transporter |
TIGRFAM ID | [TIGR00841] bile acid transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0624185 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCGCTT TGGCAGCCTT GAGTCGGTTT GTCGGTAATA CCTTTGCTTA CTGGGTGCTG CTGTTCGCCA TCCTCGCATT CATGTTCCCG CAGGTTTTCA TCGGCCTGAA AGGCTGGATC GTACCGCTGC TGGGGCTGGT CATGTTCGGC ATGGGCCTGA CCCTGAAGCT GGAAGACTTT TCCGAGGTGG CGCGTAACCC GTGGCGCGTG GCGCTGGGTG TGGTCGCGCA CTTTGTCATC ATGCCGGGCG TGGCGTGGTT GCTGTGTCAG GTGTTTCAGC TGCCACCGGA AATCGCCGTA GGGGTGATTC TGGTCGGCTG CTGCCCAAGC GGTACGTCGT CCAATGTCAT GGCCTGGCTG GCCAAGGGCG ATCTGGCACT GGCTGTCGCG ATTGCCGCGG TCACCACCCT GCTCGCCCCT TTGCTGACTC CGACGCTGAT CTGGTTGCTG GCGTCGGCCT GGCTGCCAGT GTCATTTCTG GATATGTTCT GGTCGATCCT GCAATTGGTC ATGCTGCCCA TTTTGCTTGG CGTGGTTGCG CAGCGCCTGC TAGGTGCGCG GGTCCGCTAC GCCGTGGACG TGCTGCCGCT GGTTTCGGTG GTGAGTATCG TGATGATCGT TTGCGCGGTG GTCGCCGCCA GCCAGGCGAA AATTGCCGAG TCGGGCCTGC TGATCATGGC GGTGGTGATC CTGCACAATA CGTTTGGTTT TCTGCTGGGT TATTTCACCG GCAAGGTTTT CAAGCTGCCA TTGGCGCAAC GCAAGTCACT GGCGCTGGAA GTCGGCATGC AGAACTCCGG CCTGGGCGCG GCACTGGCCA GCGCACACTT CTCGCCATTG GCGGCGGTGC CGAGTGCGCT GTTCAGTGTC TGGCACAATA TTTCCGGTGC GTTGCTGTCG ACGTATTTCA GGAAGATGCC GGAGGAAGAG AATACGTCCG CTCGTTGA
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Protein sequence | MRALAALSRF VGNTFAYWVL LFAILAFMFP QVFIGLKGWI VPLLGLVMFG MGLTLKLEDF SEVARNPWRV ALGVVAHFVI MPGVAWLLCQ VFQLPPEIAV GVILVGCCPS GTSSNVMAWL AKGDLALAVA IAAVTTLLAP LLTPTLIWLL ASAWLPVSFL DMFWSILQLV MLPILLGVVA QRLLGARVRY AVDVLPLVSV VSIVMIVCAV VAASQAKIAE SGLLIMAVVI LHNTFGFLLG YFTGKVFKLP LAQRKSLALE VGMQNSGLGA ALASAHFSPL AAVPSALFSV WHNISGALLS TYFRKMPEEE NTSAR
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