| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3839 |
|---|
| Symbol | |
|---|
| ID | 1185510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4344943 |
|---|
| End bp | 4345605 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395191 |
|---|
| Product | HAD-superfamily hydrolase |
|---|
| Protein accession | NP_793612 |
|---|
| Protein GI | 28870993 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0865807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAACGTG ATTACGATCT GTTGATTTTC GACTGGGACG GCACGCTTGC CGATTCGGTC
GGGCGAATTG TGCTGTCCAT GCGGGCAGCG GCGCTCGAAG GCGGGCTTGA GATCCGCGAC
GACTTGGCCA TCAGGGGTAT TATCGGTCTG GGGTTGCCTG AGGCAATTCG CACCCTCTAT
CCGAAGATCA GCGACAGTCG TCTGAACGAG TTCCGCCAGC ACTATGCCGA CAGCTACATG
GCAATGGATA ACGAACCTTC GCCTCTGTTC GACGGCGTTG TGGAGTCGAT GCTGGCGTTT
CGCGAGGATG GCTATCGGCT GGCGGTCGCC ACCGGCAAGG CGCGGCGCGG GCTTGATCGG
GTGCTGAAAG CCAATGGCTG GCTGGACTAT TTTGATATCA CGCGGGCCGC CGACGAGACG
GCCAGCAAGC CTGATCCATT GATGCTCAAC GAGATCATGG CGCACTGTGA TGTGGCGCCG
CAGCGTTCGC TGATGATTGG TGATGCGTCG TTCGATCTGT TGATGGCACG CAACGCAGGT
ATGGATTCGG TCGCGGTGGG CTATGGCGCG CAGCCGCTGG ATTCATTGCG TGAATTCGGT
CCGCGTCTGG CCATCGAGCA TTTTTCCGAG CTGCGTACCT GGCTGAACAG GCGCAGCGTC
TAG
|
|---|
| Protein sequence | MQRDYDLLIF DWDGTLADSV GRIVLSMRAA ALEGGLEIRD DLAIRGIIGL GLPEAIRTLY
PKISDSRLNE FRQHYADSYM AMDNEPSPLF DGVVESMLAF REDGYRLAVA TGKARRGLDR
VLKANGWLDY FDITRAADET ASKPDPLMLN EIMAHCDVAP QRSLMIGDAS FDLLMARNAG
MDSVAVGYGA QPLDSLREFG PRLAIEHFSE LRTWLNRRSV
|
|---|
| |