| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3838 |
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| Symbol | sppA |
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| ID | 1185509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4343921 |
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| End bp | 4344919 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637395190 |
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| Product | signal peptide peptidase SppA, 36K type |
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| Protein accession | NP_793611 |
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| Protein GI | 28870992 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.247109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACG AATGGAAAGC GCCTGTCTCG CAAAAAACGG ACGAGGCCAT TGAGAGCAGG
GAAGAGGCCA AAAGCTGGAA ACTTCTTGAA AAGACGCTGC TGGCCAGCGT GCAGGAACAG
CGACGTGCAC GCCGCTGGGG GATTTTCTTC AAGTTGCTGA CGGTCGCGTT TCTGTTTGTA
GCGATCGTCT TGCCGATGCT GGACTTTGAA GGCGGTGCAT CTCGCCGTTC CAGTCACACC
GCATTGATCG ACGTGCAAGG CGTAATTGCC GACAAGGAAT CGGCCAGTGC CGAAAACATT
ACCACGGCAC TGCGCGACGC GTTTGGGGAT GAGAAAACCA AAGGTGTGAT TCTGCGTATC
AACAGCCCGG GCGGCAGCCC TGTGCAGTCA GGCTACGTTT ATGACGAGAT CCGTCGTCTG
CGTGCCGAGA AGCCAAATAT CAAGGTGTAT GCCGTCATTA CCGATCTGGG CGCCTCAGGT
GCTTATTACA TTGCCAGTGC TGCCGACCAG ATCTATGCCG ACAAGGCCAG TCTGGTGGGT
TCCATCGGTG TGACGGCAGC CGGTTTCGGC TTTGTCGGCG CCATGGAAAA GCTGGGTGTT
GATCGTCGTA CCTACACGTC GGGTGAGCAC AAGGCGTTTC TAGACCCGTT CCAGCCGCAG
AAGGCCGATG AAACGCAGTT CTGGCAGAGC GTGCTGGACA CCACTCATCG CCAGTTCATT
GCCAGCGTCA AGCTGGGTCG CGGTGATCGC CTGAAAGACA AGGATCATCC GGAGATGTTT
TCCGGGTTGG TCTGGACCGG CGAGCAGGCC GTGGCGCTTG GGCTGGTCGA TGGCCTGGGC
AGTGCCAGTT ATGTGGCGCG AGAGGTGATC AAAGAGAAGG ACATCGTCGA GTACACCGTC
GAAGAGTCGC CTTTTGATCG TTTTTCGAAA AAGCTGGGCA CCAGTATCGC CGAGCGGATT
GCCATGCTTG TCGGCTTTGG TGGTCCGAGC CTGCGCTGA
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| Protein sequence | MSDEWKAPVS QKTDEAIESR EEAKSWKLLE KTLLASVQEQ RRARRWGIFF KLLTVAFLFV
AIVLPMLDFE GGASRRSSHT ALIDVQGVIA DKESASAENI TTALRDAFGD EKTKGVILRI
NSPGGSPVQS GYVYDEIRRL RAEKPNIKVY AVITDLGASG AYYIASAADQ IYADKASLVG
SIGVTAAGFG FVGAMEKLGV DRRTYTSGEH KAFLDPFQPQ KADETQFWQS VLDTTHRQFI
ASVKLGRGDR LKDKDHPEMF SGLVWTGEQA VALGLVDGLG SASYVAREVI KEKDIVEYTV
EESPFDRFSK KLGTSIAERI AMLVGFGGPS LR
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