| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3826 |
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| Symbol | holB |
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| ID | 1185497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4334243 |
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| End bp | 4335229 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637395178 |
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| Product | DNA polymerase III, delta prime subunit |
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| Protein accession | NP_793599 |
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| Protein GI | 28870980 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0470] ATPase involved in DNA replication |
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| TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.070255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTGAGG CCTACCCCTG GCAGGAATCA CTCTGGCAGC AGATGGCCGG TCGTGCGCAG
CACGCTCACG CTTATCTGTT GCATGGCCCG GCAGGTATCG GCAAGCGGGC ATTGGCCGAG
CGCCTGATGG CCAGCTTGCT GTGCAGGGCA CCCGAAGGGC TTGAGGCCTG TGGGCACTGC
AAGTCCTGCC TGTTGCTGGT GGCCGGCAGC CATCCGGACA ATTACGTGCT GGAGCCCGAA
GAGGCCGATA AGCCGATCAA GGTCGATCAG GTGCGTGATC TGGTCAGCTT TGTCGTACAG
ACCGCACAGA TGGGCGGGCG CAAGGTGGTG CTCGTCGAAC CGGTGGAGGC GATGAACGTC
AATGCCGCCA ACGCCCTGTT GAAAAGCCTC GAAGAGCCGT CGGGCAATAC CGTCCTGCTG
CTGGTCAGCC ATCAGCCAAG CCGCTTGTTG CCAACCGTCA AAAGTCGCTG TGTGCAGCAA
GCCTGCCCAC TGCCAGGCGA GCAGATGAGT CTGGACTGGC TGAGCGGCGC CTTGCCTGAT
TGTACAGCCG AAGAACGCTT CGAACTGCTG ACACTGGCCG CCGGCTCGCC GCTGTTGGCG
GTGTCGCTTC ACGCCCAAGG CGTTCGCGAA CAGCGTGCGC TGGTAGTGGA GGGGGTCAAG
AAGCTGCTCA AGCAGCAACA ATCGGCCACT CAGTTGGCTG AAGGCTGGAA AGACATTCCG
CTGTTGCTGC TGTTTGACTG GTTCTGTGAC TGGTCGCATT TGATCCTGCG CTATCAGATG
ACGCAGGATG AAGAGGGCCT TGGTCTGGGT GACATGCGCA AGGTTGTGCA ATACCTTGCG
CAGAAGTCGA CGCGCGGCAA GGTGCTGGAT ATTCAGGACT GGGTGTTGGC GCAACGACAG
AAAGTCATGT CCAAGGCCAA CCTTAACCGG GTATTGCTGC TCGAAGCATT GCTGGTGCAG
TGGGCAGGGT TGCCGGGACA GGCGTAG
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| Protein sequence | MAEAYPWQES LWQQMAGRAQ HAHAYLLHGP AGIGKRALAE RLMASLLCRA PEGLEACGHC
KSCLLLVAGS HPDNYVLEPE EADKPIKVDQ VRDLVSFVVQ TAQMGGRKVV LVEPVEAMNV
NAANALLKSL EEPSGNTVLL LVSHQPSRLL PTVKSRCVQQ ACPLPGEQMS LDWLSGALPD
CTAEERFELL TLAAGSPLLA VSLHAQGVRE QRALVVEGVK KLLKQQQSAT QLAEGWKDIP
LLLLFDWFCD WSHLILRYQM TQDEEGLGLG DMRKVVQYLA QKSTRGKVLD IQDWVLAQRQ
KVMSKANLNR VLLLEALLVQ WAGLPGQA
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