| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3809 |
|---|
| Symbol | |
|---|
| ID | 1185480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4316872 |
|---|
| End bp | 4317597 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637395162 |
|---|
| Product | oxidoreductase, short chain dehydrogenase/reductase family |
|---|
| Protein accession | NP_793583 |
|---|
| Protein GI | 28870964 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.998121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGGG CTGCTCGCGG CATCGGGCTG GGCATTGCGG CATGGTTGAT TGCCGAGGGC
TGGCAAGTTG TTTTGACTGA TCTGGACCGT GCGCGTGGCT CGAGAGTGGC CAGTGTGCTG
GGTGAAAACG CCCTGTTCAT TGGCATGGAC GTCGCCAGTG AAGAGCAGGT CGCAGCGGGC
GTGGCCGAAG TGCTCAGGCA GTTCGGTCGT CTGGACGCGC TGGTGTGCAA TGCGGCGGTC
GCCGATCCAC ACAACACCAC GCTGGAAAGC CTTGAGCTAT CGCACTGGAA TCGGGTGCTG
GCGGTCAATC TTGGCGGCCC CATGTTGTTG GCCAAGCATT GCGCGCCTTA CCTGCGCGCG
CACTGCGGCA GCATAGTAAA CCTGACGTCC ACTCGCTCCC GTCAGTCCGA GGCCGACACC
GAGGCCTACG CGGCCAGCAA GGGCGGTCTG ATGGCCCTGA CGCATGCGCT GGCGATCAGT
CTGGGGCCGG AGATCCGTGT CAATGCCGTC AGCCCGGGCT GGATCGACGC GCGCGACCCG
TCGTTGCGAA GGGCCGAGCC GCTGTCCGAG ACCGATCACG CCCAGCATCC TGCTGGCAGG
GTAGGGACGG TGGAAGATGT TGCGGCGATG GTCGCCTGGC TGCTGTCCCG AAATGCAGGT
TTCGTTACCG GGCAGGAATT TGTGGTCGAC GGCGGCATGA CCCGCAAGAT GGTCTACGCC
CAATAG
|
|---|
| Protein sequence | MTGAARGIGL GIAAWLIAEG WQVVLTDLDR ARGSRVASVL GENALFIGMD VASEEQVAAG
VAEVLRQFGR LDALVCNAAV ADPHNTTLES LELSHWNRVL AVNLGGPMLL AKHCAPYLRA
HCGSIVNLTS TRSRQSEADT EAYAASKGGL MALTHALAIS LGPEIRVNAV SPGWIDARDP
SLRRAEPLSE TDHAQHPAGR VGTVEDVAAM VAWLLSRNAG FVTGQEFVVD GGMTRKMVYA
Q
|
|---|
| |