| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3788 |
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| Symbol | pepN |
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| ID | 1185456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4290096 |
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| End bp | 4292762 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395138 |
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| Product | aminopeptidase N |
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| Protein accession | NP_793562 |
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| Protein GI | 28870943 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0308] Aminopeptidase N |
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| TIGRFAM ID | [TIGR02414] aminopeptidase N, Escherichia coli type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.345358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCACCG AACAACCGAA AATGATTTAC CTGAAGGACT ACCAGGCTCC CGAGTACCTC
ATCGATGAGA CGAACCTGAC CTTCGAGCTG TTCGACGACC ACTCGCTGGT CCACGCCCAA
CTGGTCATGC GCCGCAACCC GGAGCGTGGC GCAGGCCTGC CGCCGCTGGT GCTGGACGGC
CAGCATCTGG AACTGGTTTC GGTGAAACTG AGCGACATCG AGCTGGGCGC TGCTGATTAT
CAACTGACAG ACGATCACCT GACGCTGCAT CCACAGGCCG AAAGCTTCAC GGTCGACAGC
ACCGTGCGCA TCCATCCTGA AACCAATACC GCGCTGGAAG GCCTGTACAA GTCCAGCGGC
ATGTTCTGCA CCCAGTGTGA GGCCGAGGGC TTTCGCAAGA TTACCTACTA CCTCGACCGC
CCTGACGTGA TGAGCACATT CACCACCACG CTGAGCGCCG ACAAGCAGAA CTTTCCGATC
CTGCTGTCCA ACGGCAACCC GATTGCCAGC GGCGAAGAAG AGGGCGGACG GCACTGGGCG
ACCTGGGAAG ACCCGTTCAT GAAGCCAGCC TACCTGTTCG CGCTGGTGGC CGGTGATCTG
TGGTGCATCG AAGACACCTT TACCACCATG AGTCAGCGGG AAGTGACCCT GCGCATCTAT
GTCGAGCCAG AAAACGTCGA TAAATGCCAG CACGCCATGA CCAGCCTGAA AAAATCCATG
CGTTGGGATG AAGAGGCCTA CGGTCGCGAG TATGACCTGG ATATCTTCAT GATCGTGGCG
GTCAACGATT TCAACATGGG CGCGATGGAG AACAAGGGCC TCAACATTTT CAATTCCAGC
GCCGTGCTGG CCCGCGCCGA AACGGCTACT GATGCCGCGC ACCAGCGCGT CGAAGCGATC
GTCGCCCATG AATATTTCCA CAACTGGTCG GGCAACCGCG TGACCTGCCG TGACTGGTTC
CAGCTGTCAC TCAAGGAAGG CTTCACGGTG TATCGCGACG CCGGTTTCTC GGCCGACATG
AACTCGGCCA CGGTCAAGCG TATTCAGGAC GTTGCTTACC TGCGCACCCA CCAGTTTGCC
GAAGATGCCG GCCCGATGGC CCATGCCGTG CGCCCGGACA GCTTTATCGA AATTTCCAAC
TTCTACACCC TGACCGTGTA CGAAAAAGGT TCGGAAGTGG TCGGCATGCT TCACACCCTG
CTGGGGGCTC AAGGCTTTCG CAAGGGCAGC GACCTGTACT TCGAGCGCCA CGACGGCCAG
GCAGTGACCT GCGACGACTT CATCAAGGCC ATGGAAGACG CCAATGGCGT TGACCTGACC
CAGTTCAAGC GCTGGTACAG CCAGGCGGGC ACGCCGCGTC TGGCGGTCAG CGAGTCGTAT
GACGCTGCTG CGAACACCTA CAGCCTGACC TTCCGCCAGA GCTGCCCGAC CACACCGGGC
CAGCCTGGTG ATCAGAAACA GCCTTTCGTG ATTCCGGTCG AGCTGGGCCT GCTGGACAGC
AAAGGTGGCG AGATCGCCCT GCGCCTGGCC AACGAAACCG CCGCAACCGG CAGCACGCGG
GTGCTTTCGG TGACTGAGGC CGAGCAGACG TTCACCTTTG TCGATCTCGC TGAAAAGCCA
CTGCCGTCCT TGCTGCGTGG CTTCTCGGCA CCGGTCAGGC TGAGCTTCCC GTACGACCGC
GACCAGTTGA TGTTCCTGAT GCAGCACGAC AGCGACGGCT TCAACCGCTG GGATGCGGGC
CAGCAACTGT CGGTTCAGGT GTTGCAGGAA CTGATCGCTC AGCACCAGCA AGGTCAGCCA
CTGGTCATGG ATCAGCGCCT GATTACCGCA CTGGGCACCG TACTGGCGGA TGAGCAACTT
GATCAGGCCA TGGTCGCGGA AATGCTTTCA CTGCCGGGCG AGGCTTACCT GGCCGAGATC
AGCGAAGTGG CCGATGTCGA TGCCATTCAC GCTGCTCGCG AATTTGCTCG CCAACAACTG
GCCGATGGCC TGTTTGACAG CCTGCTGGCG CGCTACAAGG CCAACCGCGA GCTTTCCAAG
GCCACGCCAT ACGTTGCCGA ATCTGCGCAT TTCGCCCGTC GCGCGCTGCA GAACATCGCG
CTGTCGTACC TGATGCTCAG CGGCAAACCT GAAGTGCTGG CGGCGACCAT CGACCAGTTC
GACACCAGCG ACAACATGAC CGAGCGCCTG ACGGCACTGG CCGTGCTGGT CAATTCGCCG
TTCGCTGAAG AGCGCGACAA AGCGCTGGCC GTGTTCGCTG AGAACTTCAA GAACAACGCG
CTGGTCATGG ATCAATGGTT CAGCGTCCAG GCGGCCAGCA CCCAGCCGGG TGGCCTGCAA
CGCGTACAGG AATTGATGAA ACATCCTGCC TTCAGCATCA AGAACCCGAA CAAGGTCCGC
GCCCTTATCG GCGCGTTTGC CGGGCAGAAC CTGATCAACT TCCACGCTGC GGACGGCTCT
GGCTACCGCT TCCTGGCGGA CCTGGTCATT GAACTGAACG CCCTGAACCC ACAAATCGCC
TCCCGCCAAC TGGCCCCTCT GACCCGCTGG CGCAAATACG ACAGCGCCCG TCAGGCGCTG
ATGAAAGCAG AGCTGGAGCG CATCCTCGCC TCCGGCAAAC TGTCGGCGGA TGTGTATGAA
GTGGTGAGCA AAAGCCTGGC TGAATGA
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| Protein sequence | MRTEQPKMIY LKDYQAPEYL IDETNLTFEL FDDHSLVHAQ LVMRRNPERG AGLPPLVLDG
QHLELVSVKL SDIELGAADY QLTDDHLTLH PQAESFTVDS TVRIHPETNT ALEGLYKSSG
MFCTQCEAEG FRKITYYLDR PDVMSTFTTT LSADKQNFPI LLSNGNPIAS GEEEGGRHWA
TWEDPFMKPA YLFALVAGDL WCIEDTFTTM SQREVTLRIY VEPENVDKCQ HAMTSLKKSM
RWDEEAYGRE YDLDIFMIVA VNDFNMGAME NKGLNIFNSS AVLARAETAT DAAHQRVEAI
VAHEYFHNWS GNRVTCRDWF QLSLKEGFTV YRDAGFSADM NSATVKRIQD VAYLRTHQFA
EDAGPMAHAV RPDSFIEISN FYTLTVYEKG SEVVGMLHTL LGAQGFRKGS DLYFERHDGQ
AVTCDDFIKA MEDANGVDLT QFKRWYSQAG TPRLAVSESY DAAANTYSLT FRQSCPTTPG
QPGDQKQPFV IPVELGLLDS KGGEIALRLA NETAATGSTR VLSVTEAEQT FTFVDLAEKP
LPSLLRGFSA PVRLSFPYDR DQLMFLMQHD SDGFNRWDAG QQLSVQVLQE LIAQHQQGQP
LVMDQRLITA LGTVLADEQL DQAMVAEMLS LPGEAYLAEI SEVADVDAIH AAREFARQQL
ADGLFDSLLA RYKANRELSK ATPYVAESAH FARRALQNIA LSYLMLSGKP EVLAATIDQF
DTSDNMTERL TALAVLVNSP FAEERDKALA VFAENFKNNA LVMDQWFSVQ AASTQPGGLQ
RVQELMKHPA FSIKNPNKVR ALIGAFAGQN LINFHAADGS GYRFLADLVI ELNALNPQIA
SRQLAPLTRW RKYDSARQAL MKAELERILA SGKLSADVYE VVSKSLAE
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