| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3741 |
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| Symbol | |
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| ID | 1185409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4225753 |
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| End bp | 4227606 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395091 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_793515 |
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| Protein GI | 28870896 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.130884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTCAAC CCAGCGCTTC GCTTGCTCAC GACCTCATCA TTCAGGATTC ATGGACTCGC
TGCCGGGACT TCGGTCTCAG CCATCAGACG CGTCCATCGT TCGGCCAGCT GCCGGGCGCA
GAGGTTTCCC GGCTGCTGGA ACGCCATCAC GGTCTGGTGC AAACCACCCA TCAGGAGGTG
TTGCCGGTCT ATGAAAACAT CCTCAGCAAC TCCAATTGCC TGATCATGCT GGCCGACACT
GATGGCCAGT TACTCAAGTC GTGGGGCAAT CAGCGTTTCG TCGAAGCTTC GCAAACCCTG
GGCTTCCTGG CCGGAGCCAG TTGGAGCGAA CGCGGCACCG GCACCAACGC CATCGGCACG
GCGCTGGCCT GCGAACAGGC GATTCATATC GAGCCGGATG AACACTTTCT CAAAGCCAAC
CGGTTCATGA CCGGTTCTGC TTCGCCGATC TTCGATGCCG ATCGGCGCAT CATTGCCGTA
CTGGATGTGT CGAGTGACAG CTTCCTTCCC CCTTCGCACA CGCTGGGCAT GGTCAAAATG
ATGAGCCAGT CGGTGGAAAA CCGCCTGATC CTCGATCAGT TCCGCGACAC GCATTTCCAG
CTGATCTTCA ATACAGCCCT GAACAACCTC GACAGCCAGT GGGCAGGCCT GCTGATTTTC
GACGAAAGCG GCCGGATTCT CTGCGCTAAT CGCCGCGCCG ACAATTTGCT GGGCACCCGG
CTTTCTGGTG TCAATATCGA GACGCTGTTC AAGTGCCCGA TTCTGCAACT GCTGAGCGAG
ACGCAAGCGC GCCCCTTCGC GCTGCATGCG TTTGGCAACA ATCGCTTTCA ATGCCTACTC
AAGCGTCCGA CTCGCAAGCC GCTCAAGCTG CACAGCGTAA AGCCCGCTCA GGCACCTGTT
GCGCCGCGCA GCCTCGATCT GGAGGCGATC AGCCTCGGCG ATGCAAGAAT CGAGAAAGCC
GTGCTCCAGG CGCAGCGCCT GCTGGAAAAA GACATACCGT TGTTGATTCA CGGGGAAACC
GGGGTGGGCA AGGAAGTGTT CGTCAAAGCG CTGCATCAGG CCGGTTCGCG CGCCAGCGAG
CCACTGATCG CGGTGAACTG CGCGGCAATT CCGGCCGATT TGGTCGAGGC CGAGCTGTTT
GGCTACGAGA GAGGCGCGTT TACCGGCGCA AACCAGAAAG GCAGCATCGG GCTGATTCGC
AAGGCCGATA AAGGCACGCT GTTTCTCGAT GAGGTCGGCG ACATGCCGAT GCCGGTGCAG
GCGCGATTGC TACGGGTGTT GCAGGAGCGC TGCGTTCAAC CACTGGGCAG CAGCGAGTTG
TATCCGGTAG ACATACGGCT GATATCCGCC ACCAACCGAA CCCTGCGTGA TCAGGTGCAG
ACCGGGCATT TTCGTCAGGA CCTTTATTAT CGAATCAGCG GGCTCAACAT CGAATTGCCA
CCATTGCGCG AGCGCACCGA CAAACATGCA CTCATCCAGC GTATCTGGGA GCGGCATCGC
GACGCGCATC AACGGGCGGG GTTTTCCCGA GAGGTGCTTG AGCTGTTTGA ACACCATCCC
TGGCCGGGCA ATATTCGCCA GCTCAACAGC GTGATTCAGG TGGCACTGGC ATTGGCGGAC
GAGCAGCCGA TCAGTGCCGA ACACCTGCCG GAAGACTTTC TGCTGGATGT GGGCATGGAT
GAGGAATGCC GGGAGACGGC GCAAGCCCGT CAATCGCCCT ACCGACAGTC GTCGACGCAA
GACCTGAGCC ACCAGTTGCA GGCCGCGGGC GGAAATATTT CACTGCTGGC CAAACAGTTG
GGCGTGAGCC GCAACACGCT GTACAAGCGG TTGCGGGAAC AGCGGATTGT TTAG
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| Protein sequence | MSQPSASLAH DLIIQDSWTR CRDFGLSHQT RPSFGQLPGA EVSRLLERHH GLVQTTHQEV
LPVYENILSN SNCLIMLADT DGQLLKSWGN QRFVEASQTL GFLAGASWSE RGTGTNAIGT
ALACEQAIHI EPDEHFLKAN RFMTGSASPI FDADRRIIAV LDVSSDSFLP PSHTLGMVKM
MSQSVENRLI LDQFRDTHFQ LIFNTALNNL DSQWAGLLIF DESGRILCAN RRADNLLGTR
LSGVNIETLF KCPILQLLSE TQARPFALHA FGNNRFQCLL KRPTRKPLKL HSVKPAQAPV
APRSLDLEAI SLGDARIEKA VLQAQRLLEK DIPLLIHGET GVGKEVFVKA LHQAGSRASE
PLIAVNCAAI PADLVEAELF GYERGAFTGA NQKGSIGLIR KADKGTLFLD EVGDMPMPVQ
ARLLRVLQER CVQPLGSSEL YPVDIRLISA TNRTLRDQVQ TGHFRQDLYY RISGLNIELP
PLRERTDKHA LIQRIWERHR DAHQRAGFSR EVLELFEHHP WPGNIRQLNS VIQVALALAD
EQPISAEHLP EDFLLDVGMD EECRETAQAR QSPYRQSSTQ DLSHQLQAAG GNISLLAKQL
GVSRNTLYKR LREQRIV
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