Gene PSPTO_3630 details

Gene Information

• Locus tag: PSPTO_3630
• Symbol: ccmF
• ID: 1185295
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 4090581
• End bp: 4092554
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637394979
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: NP_793406
• Protein GI: 28870787
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCCCG AACTCGGCCA TCTGGCCATG ATTCTGGCGT TGGGTTTTGC GCTGGTGCAG 
GCCATCGTCC CGCTGATCGG TGCGTGGCGT GGCGACCGCT TGTGGATGAG CCTGGCGCGT 
CCAGCGGCGT GGGGCCAGTT CAGCTTTCTG ATCTTCGCCT TCGGTTGCCT GACCTACGCG 
TTCATGACCG ATGATTTTTC CGTTACCTAT GTGGCGCAGA ATTCCAACAC CGCGCTGCCC 
TGGTACTACA AGTTCAGCGC CGTGTGGGGC GCGCATGAAG GCTCGTTGCT GCTCTGGGCG 
TTGATTCTCG GTGGCTGGAC CTTCGCGGTG TCGGTGTTTT CCCGGCAACT GCCACAGGTG 
ATGCTGGCGC GGGTACTGGC CGTGATGGGC ATGATCAGCC TGGGCTTTTT GCTGTTTCTG 
ATCCTCACGT CCAACCCGTT TGCCCGCCTG CTGCCGCAAA TGCCTGCCAA CGGGCGCGAT 
CTCAACCCGT TGTTGCAGGA TATCGGCCTG ATCGTGCATC CGCCGATGCT GTACATGGGC 
TATGTGGGGT TTTCCGTAGC CTTTGCGTTT GCCATTGCGG CGCTGCTCGG CGGGCGACTC 
GACGCTGCCT GGGCGCGCTG GTCGCGACCC TGGACACTGG TGGCCTGGGC GTTTCTCGGC 
ATCGGCATCA GCCTTGGCTC GTGGTGGGCG TATTACGAAC TGGGCTGGGG CGGCTGGTGG 
TTCTGGGACC CGGTGGAAAA CGCCTCGTTC ATGCCCTGGC TGGTGGGCAC GGCGCTGATT 
CATTCGCTGG CGGTCACGGA AAAACGCGGC GTGTTCAAGA GCTGGACGGT GCTGCTGGCA 
ATTGCGGCGT TTTCCCTGAG CCTGCTGGGC ACGTTTCTGG TGCGTTCCGG GGTGCTGACG 
TCGGTACACG CTTTCGCCTC GGACCCGGCA CGCGGCGTGT TCATTCTGAT GTTCCTGCTG 
GTTGTGGTGG GCGGCTCGCT GACCCTGTTC GCGATTCGTG CGCCGGTGGT GAAAAGCCAC 
GTCGGCTTTG GCCTGTGGTC GCGGGAAACC TTGCTGCTCG GCAATAACCT GTTGCTGGTG 
GTGGCCGCGT CGATGATCCT GCTCGGCACG CTTTATCCGC TGGTGATCGA CGCCATCAGC 
GGCGACAAGA TGTCGGTCGG TCCGCCGTAT TTCAACGCGC TGTTCGTGCC GTTGATGGGG 
CTGTTGCTGG CAGTCATGGC GGTCGGTGTA CTGGTGCGCT GGAAGGACAC GCCGCTGAAA 
TGGCTGCTGG GCATGCTCGC CCCGGTGCTG ATCGGCAGCG CCGTGCTGGC GGTGATCGCC 
GGGCTGGTCA TGGGCGATTT TCAGTGGGCG GTGCTGGCCA TCTTCATGCT CGCTGCCTGG 
GTGCTGCTGG CCGGGCTGCG CGACCTGTTT GACAAGACCC GTCACAAGGG GCTTCTCAAA 
GGCGCACGCA GCCTGACCCG CAGTTATTGG GGCATGCAGC TTGCGCACTT TGGCATCGTG 
GTGTGCGCGC TGGGCGTGGT GCTATCCAGC CAGAACAGCG CCGAGCGCGA TTTGCGCATG 
GCCCCGGGTG AGTCCACCGA GCTGGGCGGT TATGTGTTTG TGTTCGAGGG CGCGAAGCAT 
TATGAAGGGC CCAATTTCAC CTCGGATCGT GGCACCGTTC GCGTCCTGCG TAACGGCGTG 
CAGCTCACTG AACTGCACCC GGAGAAACGC CTTTACAGCG TGCAGCAATC AATGATGACC 
GAGGCGGGCA TCGACGCCGG TTTCAGCCGC GATCTTTACG TGGCCTTGGG CGAACCGCTG 
GGCAATGGCG CCTGGGCGGT GCGGGTTCAC GTCAAACCGT TCGTGCGCTG GATCTGGTTC 
GGCGGCTTGC TGACCGGTCT TGGCGGGGTG CTGGCGGCGC TGGACCGGCG TTATCGCACG 
CGGGTCAAAA CCAGAGTGCG TGAGGCGCTT GGCCTGTCGG GAGCTGCGCG ATGA 

 

Protein sequence

MIPELGHLAM ILALGFALVQ AIVPLIGAWR GDRLWMSLAR PAAWGQFSFL IFAFGCLTYA 
FMTDDFSVTY VAQNSNTALP WYYKFSAVWG AHEGSLLLWA LILGGWTFAV SVFSRQLPQV 
MLARVLAVMG MISLGFLLFL ILTSNPFARL LPQMPANGRD LNPLLQDIGL IVHPPMLYMG 
YVGFSVAFAF AIAALLGGRL DAAWARWSRP WTLVAWAFLG IGISLGSWWA YYELGWGGWW 
FWDPVENASF MPWLVGTALI HSLAVTEKRG VFKSWTVLLA IAAFSLSLLG TFLVRSGVLT 
SVHAFASDPA RGVFILMFLL VVVGGSLTLF AIRAPVVKSH VGFGLWSRET LLLGNNLLLV 
VAASMILLGT LYPLVIDAIS GDKMSVGPPY FNALFVPLMG LLLAVMAVGV LVRWKDTPLK 
WLLGMLAPVL IGSAVLAVIA GLVMGDFQWA VLAIFMLAAW VLLAGLRDLF DKTRHKGLLK 
GARSLTRSYW GMQLAHFGIV VCALGVVLSS QNSAERDLRM APGESTELGG YVFVFEGAKH 
YEGPNFTSDR GTVRVLRNGV QLTELHPEKR LYSVQQSMMT EAGIDAGFSR DLYVALGEPL 
GNGAWAVRVH VKPFVRWIWF GGLLTGLGGV LAALDRRYRT RVKTRVREAL GLSGAAR