Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3603 |
Symbol | |
ID | 1185268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4062841 |
End bp | 4063530 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394955 |
Product | DNA-binding heavy metal response regulator |
Protein accession | NP_793382 |
Protein GI | 28870763 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR01387] heavy metal response regulator |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.203952 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATATCC TGCTGATTGA AGACGACACC AAGACCGGCG AGTACCTGAA GAAGGGCCTG GGCGAATCCG GCTATAAGGT GGACTGGACC CAGCACGGCG CCGACGGCCT GCACCTGGCG CTGGAAAACC GCTACGACCT GATCGTGCTG GACGTGATGT TGCCCGGTAT CGACGGCTGG CAGATCATCG AAGTGCTGCG CGCCCGGCAG GACGTGCCGG TGTTGTTCCT GACCGCCCGC GATCAATTGC AGGACCGGAT TCGCGGCCTG GAGCTGGGCG CCGACGATTA CCTGGTCAAG CCGTTTTCCT TCACTGAACT GCTGCTGCGC ATTCGCACCA TCCTGCGCCG TGGCGTGGTG CGCGAGGCCG ATCACTTTCA TCTGGCCGAC CTGGAACTCG ACCTGTTGCG CCGCCGCGTG ACACGTCAGC AACAGGTCAT CGTGCTGACC AACAAGGAGT TCGCCCTGCT GCACCTTTTG TTGCGCCGCG AAGGCGATGT GCTGTCACGG GCACAGATTG CCTCGGAAGT CTGGGACATG AATTTCGACA GCGACACCAA TGTAGTGGAC GTCGCCATCA AGCGCCTGCG CAGCAAGGTC GACCTGCCCT ACCCGGTCAA GCTCATTCAC ACCGTGCGCG GCATCGGTTA TGTGTGCGAG GTGCGGCCAT GCGACGCCAG CCTTCCCTGA
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Protein sequence | MHILLIEDDT KTGEYLKKGL GESGYKVDWT QHGADGLHLA LENRYDLIVL DVMLPGIDGW QIIEVLRARQ DVPVLFLTAR DQLQDRIRGL ELGADDYLVK PFSFTELLLR IRTILRRGVV READHFHLAD LELDLLRRRV TRQQQVIVLT NKEFALLHLL LRREGDVLSR AQIASEVWDM NFDSDTNVVD VAIKRLRSKV DLPYPVKLIH TVRGIGYVCE VRPCDASLP
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