| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3537 |
|---|
| Symbol | |
|---|
| ID | 1185202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3993061 |
|---|
| End bp | 3994476 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394890 |
|---|
| Product | membrane protein PslJ |
|---|
| Protein accession | NP_793317 |
|---|
| Protein GI | 28870698 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0975897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGG CCATGCCCGT AGGATTGCTG ATCAGCCTGT TATTCGGGGT GATGATCTGG
CTGTTGCCGA TACCGCTGGT GCTGATGGCT ATGCTGGGTA TCGCCGCGGT GGTCACGGTG
ATTCGCCGCC CGGTGCTCGG GTTGCTGCTG TTTGGTCTGA TCGGCACCTT TCTGCCCTAT
TCCACGGTGC AGATCGGCAT CCGCACCACG GTGTCCGAAG CGCTGATCAT GCTGACGTGG
GCCAGCTATC TGTTGCAGGG TGTGTTCCAG ATGCATGACA AAGCACCCGC CATGCTGCGC
ACCGAGCGGC TGCTGGTAGC GTTGATGCTG TTCAGTGCTT TCCCGTTTCT GGTCGGCCAG
CTGACCGTCG TCGCCGAAGG CAACGGGCCG GTCAACTGGG TCCGCTGGCT GTTCAACCTG
TCGATTCTGT TTCTCGTGCC GCGCCTGCTC ACCGACCTCA AGACCCTGGA AAGCCTGGTC
GTGGCGGTGC TTGGCGGGAC ATTACTGTTG TTGCTGATGT CGATTTCGGT CTACGTGACC
AAACGCTCGG GGACGGCCAT TATCCCCATC CTTGGCAGCC TGGGTTACAG CGGCGCCGAT
ATTCTCAACG AAAGCCTGCA ATCGTTCTCC AGCCGGATGG GCTCGCCGTG GATGCACCCC
AATGTGGCAG GCGGAGCCCT GGCAATGCTG ATGCCGCTGG CGTTCTGCTT TGGCATGACG
CGCAGTGGCG CAGCCCGCAA GCTGGGCCTG GCGGTGTCGG TGCTGGGGGC CATCGGCCTG
CTGCTGACCG GTTCACGCGG TGCGCTGGTG AGCCTGGTGG CTGTGATGCT GTGGATGGCC
CGGCGGCGTA TTCCGCATTT GGGACGGCTG TTGATGGGCG GCATGGTTGC CGGTGTCGTG
CTGTTGATGT TCTATCCGCC GCTGCAAGAG CGGTTGATGG GCCTGTTCAG CGATGACGAC
GTCAGTACGG CGATTCGCTT TCTGGAGTAC AGCCACTTTC CGGACGCCAT GGCCACCTTT
CCGTTCGGCA TCGGCTTCAA GACCGACCCG CCGGTGCTGG GCTACACCCA ATTCGGCATT
TCCAACCTGT GGCTGAACTT CATCTACAAG ATCGGCCTGC CGGGCATGCT GCTGTTCATT
GCCGTCACCG TCAGTTGGTG GAAGGACGTG CGCCCCGCGT CCGGCCGGGT GGTGCTGACT
CACCAAAACG CCATTGCGCT GGGCTGCACG ACGGGTGTGC TGGCGGCGTT GTTCAGCGGC
CTGTTTGACC ACTATTTCAG TTTTACCAGC GTGCTGGCTG CCTTGTTCTG GTTGTTTGTC
GGCATCAGCC TGCACGAAAC CCGACGCCTG CGCGCCCAGG CCGCACGCAC TCATCAATAC
CCTGTCACCT CACCCGAGCC GGGAGCCTCC TCATGA
|
|---|
| Protein sequence | MPLAMPVGLL ISLLFGVMIW LLPIPLVLMA MLGIAAVVTV IRRPVLGLLL FGLIGTFLPY
STVQIGIRTT VSEALIMLTW ASYLLQGVFQ MHDKAPAMLR TERLLVALML FSAFPFLVGQ
LTVVAEGNGP VNWVRWLFNL SILFLVPRLL TDLKTLESLV VAVLGGTLLL LLMSISVYVT
KRSGTAIIPI LGSLGYSGAD ILNESLQSFS SRMGSPWMHP NVAGGALAML MPLAFCFGMT
RSGAARKLGL AVSVLGAIGL LLTGSRGALV SLVAVMLWMA RRRIPHLGRL LMGGMVAGVV
LLMFYPPLQE RLMGLFSDDD VSTAIRFLEY SHFPDAMATF PFGIGFKTDP PVLGYTQFGI
SNLWLNFIYK IGLPGMLLFI AVTVSWWKDV RPASGRVVLT HQNAIALGCT TGVLAALFSG
LFDHYFSFTS VLAALFWLFV GISLHETRRL RAQAARTHQY PVTSPEPGAS S
|
|---|
| |