Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3534 |
Symbol | |
ID | 1185199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3989436 |
End bp | 3990749 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637394887 |
Product | glycosyl hydrolase, family 5 PslG |
Protein accession | NP_793314 |
Protein GI | 28870695 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3664] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.648854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGTT CATCCAGATT CCGGCTCGCT GTCACCACTG CACTGATCGC CGCCACACTG AGCGCCGCCG CTCAGGCTGC GACAGTGCTC AAAGGCCCGC GCGAAGTGGT CTGGAAGGAT TTTCTCGGCG TCAACGTGCA GTTTCAGTAC TTCGCGCCGG ACATCTATCA GCAACAGATG AACCGCCTCG ACGAGCTGGG CCTGAACTGG GTTCGGCTGA CCATCCACTG GCCAATCATC GAACCGCAAA AGGACCAGTA CGCCCTGACC GAACTGGATG CCGCCATGGC GGCGATCAAG GCCCACAACT ACAACACGCT GGCGTACCTG GTCGGCTCGG CGTCTTTCGC CAGCAGCGCG CCGGCCAACG CGCAGAGCCG CGATCAATAC CCGCCCAAGG ATTTCAGCGT GTTTGCCGCA CGCATGACCG CCCTCGCCCA GCGTTACCCA CAGGTGAACA ACTGGCAGGT CTGGAACGAG CCGAACATCA TCTGGCTGCC CAAGGAAGAC CCGGCGGCGT ATGGTCGCCT GCTGACCACC ACCGCCGATG CGATTCGCGC CGTGCTGCCG AACAAGACCA TCGTCACTGC AGGCATGGCC TATTACAGCC AGATGCACAG TACCTCCGGC TATATGTTGC AGACCTTGAT CGACAACGGC CTGGGCCAGC AGAACATCGT CGCCGCCTAC CACCCGTATT CCGAGTACCC GGAAGGCGAC TCGGTGCCGG ACCGTGATTT TCTGGTACGC GCCAACGCCA TGAACCAACT GCTGCACAGC AATGGCGTCA GTCAGGTGTG GGCCACCGAA TGGGGCTGGT CGAGCTACGC CGGCCCTGTG GAGATGCAGC GTCTGATCGG CACTCCCGGC CAGGCCGACT ACACCCTGCG ACGCCTGGCG CTGATGAGTG CAATGGATTT CCAGCGTATC TTCCTGTTCA ACCTCAGCGA TCTGGATGAA CGCGCGTCGG CCCGCGACCA AGGCTACGGG CTGCTCGACC TGCAAGCCAA CCCCAAACCG GTCTACACCG CGCTGCAGAA TTTTCTGAAG ATCACCGGCC CGCGCCTGCA ACCTGCCGAT CCGCCCGCAG TGAGCGCTGT ACCGGACGAC CTGTACGCCG TGCCGTGGAC CCGTGAAGAC GGCACTCGCC TGCTGATGTT CTGGAGTGCT GCCGGCACAT CGCTGACGCT CCCGAACATC ACCAGCGCCG TCGTGCATGA CCCGCTGACC GGCAGCCGCA CCCCGCTGTC CGGCAGCCAG GGCATCACTC TGCTGCTCAA GCCGTCTCTG CAAATCCTGG AATGGAAGCC CTAA
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Protein sequence | MQRSSRFRLA VTTALIAATL SAAAQAATVL KGPREVVWKD FLGVNVQFQY FAPDIYQQQM NRLDELGLNW VRLTIHWPII EPQKDQYALT ELDAAMAAIK AHNYNTLAYL VGSASFASSA PANAQSRDQY PPKDFSVFAA RMTALAQRYP QVNNWQVWNE PNIIWLPKED PAAYGRLLTT TADAIRAVLP NKTIVTAGMA YYSQMHSTSG YMLQTLIDNG LGQQNIVAAY HPYSEYPEGD SVPDRDFLVR ANAMNQLLHS NGVSQVWATE WGWSSYAGPV EMQRLIGTPG QADYTLRRLA LMSAMDFQRI FLFNLSDLDE RASARDQGYG LLDLQANPKP VYTALQNFLK ITGPRLQPAD PPAVSAVPDD LYAVPWTRED GTRLLMFWSA AGTSLTLPNI TSAVVHDPLT GSRTPLSGSQ GITLLLKPSL QILEWKP
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