Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3517 |
Symbol | fadB |
ID | 1185182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3967722 |
End bp | 3969887 |
Gene Length | 2166 bp |
Protein Length | 721 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394870 |
Product | fatty oxidation complex, alpha subunit |
Protein accession | NP_793297 |
Protein GI | 28870678 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.330047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTACG AAGGTAAAGC CATCACGGTT AAGGCTCTTG AAAGTGGCAT CGTCGAATTG AATTTCGACC TCAAGGGTGA GTCCGTCAAC AAGTTCAACC GCCTCACCCT CAACGAGTTG CGTCAGGCGG TCGACGCCGT CAAGGCCGAC GCATCGGTCA AGGGCGTGAT CGTCACCAGC GGCAAGGACG TGTTCATCGT CGGTGCCGAC ATCACCGAGT TCGTCGACAA CTTCAAGTTG CCGGAAGCCG AACTGGTTGC GGGCAATCTG GAAGCCAACA GGATTTTCAG CGATTTCGAA GACCTGGGCG TGCCCACCGT TGTCGCCATC AACGGCATTG CGCTGGGTGG TGGTCTGGAA ATGTGCCTGG CCGCAGACTA TCGAGTCATC TCCAGCAGCG CCCGTGTCGG CCTGCCGGAA GTCAAGCTGG GCCTGTATCC AGGTTTCGGC GGTACCGTGC GCCTGCCGCG CATCATCGGC GCCGACAATG CTATCGAATG GATCGCATCG GGCAAGGAAA ACTCCGCAGA AGACGCGCTT AAAGTCGGTG TTGTCGATGC AATAGTGGCT CCCGAGAAGC TTCAGGCCGC AGCGCTTGAC CTTATCCAGC GCGCTATTTC CGGCGAGTTC GATTACAAGG CCAAGCGTCA ACCAAAGCTG GACAAGCTCA AACTGAACGC CATCGAGCAG ATGATGGCAT TCGAGACCGC CAAGGGTTTT GTCGCAGGTC AAGCCGGGCC GAATTACCCG GCGCCGGTCG AAGCCATCAA GACCATCCAG AAAGCCGCCA TCTTTGGCCG TGACAAGGCA CTGGAAATCG AAGCCGCCGG TTTCGTGAAA ATGGCCAAGA CTTCGGCCGC GCAGAGCCTG ATCGGCCTGT TCCTGAATGA TCAGGAGCTG AAAAAGAAAG CCAAGGGCTA CGACGAAGTG GCTCGCGACG TGAAACAGGC CGCCGTGCTG GGGGCCGGGA TCATGGGCGG CGGTATTGCC TATCAGTCTG CGGTCAAGGG CACGCCGATC CTGATGAAGG ACATCCGCGA AGAAGCCATT CAACTGGGCC TGAACGAAGC CTCCAAGCTG CTGGGCGGTC GCCTTGAAAA AGGCCGTCTG ACCGCTGCGA AGATGGCAGA AGCGCTAAAC GCGATTCGTC CTACGCTGTC CTACGGCGAT TTCGGCAATG TCGACCTGGT GGTTGAAGCG GTTGTCGAAA ACCCCAAGGT CAAACAGGCC GTACTCGCTG AAGTCGAAGC CAACGTCGGT GAAAACACCA TTCTGGCTTC CAACACCTCG ACCATTTCCA TCAGCCTGTT GGCGCAAGCG CTCAAGCGCC CGGAAAACTT CGTCGGCATG CACTTCTTCA ATCCGGTGCA CATGATGCCG CTGGTGGAAG TGATCCGTGG CGAGAAGTCC AGCGAAGAGG CTGTCGCCAC CACCGTTGCC TATGCCAAGA AAATGGGCAA GAACCCGATT GTGGTCAACG ACTGCCCGGG CTTTCTGGTC AATCGCGTGC TGTTCCCGTA CTTCGGCGGT TTCGCCAGAC TGGTCAGCGC GGGCGTGGAT TTCGTGCGCA TCGACAAGGT CATGGAAAAA TTCGGCTGGC CGATGGGCCC TGCGTACCTG ATGGACGTTG TCGGCATCGA CACCGGCCAC CACGGCCGTG ACGTGATGGC TGAAGGCTTC CCCGACCGCA TGAAAGACGA CCGTCGTTCT GCCGTTGACG CGTTGTATGA AGCCAATCGT CTGGGCCAGA AGAACGGCAA GGGCTTCTAT GTCTACGAGA CCGACAAGAA GGGCAAGCCC AAGAAGGTCA ACGATCCGGC GGTGCTGGAC GTGCTCAAGC CGATTGTCTA CGAGCAGCGT GAAGTCAGCG ATGAAGACAT CATCAACTGG ATGATGATCC CGCTGTGCCT GGAAACCGTT CGCTGCCTGG AAGACGGCAT CGTCGAAACG GCTGCCGAAG CTGACATGGG CCTGATCTAC GGTATTGGTT TCCCTCCATT CCGTGGCGGT GCGCTGCGCT ACATCGATTC CATCGGTGTT GCCGAATTCG TTGCCCTGGC CGATCGATAT GCCGAGCTGG GTGCCCTGTA TCAACCGACC GCAAAGCTGC GTGAGATGGC CGCCAATGGC CAGAGCTTCT TCGGTCAAGC GTCTTCCGAG GTATGA
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Protein sequence | MIYEGKAITV KALESGIVEL NFDLKGESVN KFNRLTLNEL RQAVDAVKAD ASVKGVIVTS GKDVFIVGAD ITEFVDNFKL PEAELVAGNL EANRIFSDFE DLGVPTVVAI NGIALGGGLE MCLAADYRVI SSSARVGLPE VKLGLYPGFG GTVRLPRIIG ADNAIEWIAS GKENSAEDAL KVGVVDAIVA PEKLQAAALD LIQRAISGEF DYKAKRQPKL DKLKLNAIEQ MMAFETAKGF VAGQAGPNYP APVEAIKTIQ KAAIFGRDKA LEIEAAGFVK MAKTSAAQSL IGLFLNDQEL KKKAKGYDEV ARDVKQAAVL GAGIMGGGIA YQSAVKGTPI LMKDIREEAI QLGLNEASKL LGGRLEKGRL TAAKMAEALN AIRPTLSYGD FGNVDLVVEA VVENPKVKQA VLAEVEANVG ENTILASNTS TISISLLAQA LKRPENFVGM HFFNPVHMMP LVEVIRGEKS SEEAVATTVA YAKKMGKNPI VVNDCPGFLV NRVLFPYFGG FARLVSAGVD FVRIDKVMEK FGWPMGPAYL MDVVGIDTGH HGRDVMAEGF PDRMKDDRRS AVDALYEANR LGQKNGKGFY VYETDKKGKP KKVNDPAVLD VLKPIVYEQR EVSDEDIINW MMIPLCLETV RCLEDGIVET AAEADMGLIY GIGFPPFRGG ALRYIDSIGV AEFVALADRY AELGALYQPT AKLREMAANG QSFFGQASSE V
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