| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3514 |
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| Symbol | topA |
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| ID | 1185179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3963478 |
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| End bp | 3966087 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394867 |
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| Product | DNA topoisomerase I |
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| Protein accession | NP_793294 |
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| Protein GI | 28870675 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAAAT CGCTGGTCAT CGTGGAATCC CCGGCTAAGG CCAAGACCAT CAACAAGTAT
TTGGGCAACC AGTACGTGGT GAAGTCGAGT ATCGGCCATA TCCGAGACCT GCCCACCAGC
GGTTCGGCTA GTGCTGCCAA AGACCCTGCC GCCAAGCGCG GCAAGGCTGC TGCGGGCGAA
GGCCCGGTAC TGACGCCCAA GGAAAAGGCT CAGCGCCAGT TGGTCTCGCG CATGGGCGTC
GACCCGGAAC ACGGCTGGAA AGCCAAATAC GAGATCCTTC CCGGCAAGGA GAAGGTTATC
GAAGAGCTGC GCAAGCTCGC CAAGGATGCC GACACCATCT ATCTCGCGAC GGACTTGGAC
CGCGAAGGGG AAGCCATTGC CTGGCACCTG CGCGAAGCCA TCGGTGGGGA TGACAGTCGT
TACAAGCGCG TGGTGTTCAA CGAAATCACC AAGAAGGCCA TCCAGGAAGC GTTTTCCAGA
CCGGGTGAGC TGGACATCGC CCGAGTCAAT GCTCAGCAGG CGCGTCGTTT CCTTGACCGC
GTTGTGGGCT ATATGGTCTC GCCGCTGCTG TGGCAGAAGG TTGCTCGTGG CCTGTCCGCA
GGGCGTGTGC AGTCGGTTGC CGTGAAGCTG GTGGTTGAGC GCGAACGCGA AATCCGCGCC
TTCAACCCCG AAGAATACTG GGAAATCCAC GCCGACCTCG GCACTGCCAA AGGCGCAAAC
GTGCGCTTCG ACGTGGCGCG TGAAAAAGGC GAAGCGTTCA AGCCGTTGAA CGAAAAGCAG
GCGATGGCCG CACTTGAAAA GCTCAAGGCG TCCAGCTATA GCATTGTCAA GCGTGAAGAC
AAGCCGACCA GCAGCAAGCC GTCGGCACCG TTCATCACCT CGACTCTGCA ACAGGCTGCG
AGCAATCGCC TGGGTTTCGG CGTGAAGAAA ACCATGATGA TGGCTCAGCG CCTGTACGAG
GCGGGCTACA TCACTTACAT GCGTACCGAC TCCACCAACC TGTCGGCCGA TGCCGTCAGC
ATGGCGCGCG ACTACATCGA AACCGAGTTC GGCAAGAAGT ACCTGCCGGA AGCGGCGAAT
GTCTACAGCA GCAAGGAAGG CGCACAAGAG GCTCACGAAG CGATTCGTCC GTCCGACGTC
AACACCCATC CTTCGAAGCT GACCGGCATG GAACGTGATG CAGAGCGCCT CTACGAGCTG
ATCTGGCGCC AGTTCGTGGC CTGCCAGATG CTTCCTGCGC AGTACCTGTC GACCACCGTC
ACGGTTGCAG CCGGCGATTT CGAACTGCGT GCCAAAGGCC GCATCCTGAA GTTCGACGGT
TATACCCGTG CGTTGCCGCA AATGGCCAAG CCAGGCGATG ACGACGTGCT GCCAGACATG
GCGCAGGGCG AAGTTCTGAA GCTGAACACG CTGGACCCCA GCCAGCACTT CACCAAGCCG
CCGGCGCGTT ACTCCGAAGC GAGCCTGGTC AAGGAAATGG AAAAACGCGG TATCGGTCGC
CCGTCGACCT ACGCAGCGAT CATTTCGACC ATTCAGGACC GTGGCTACGT GGCGCTGCAT
AACCGCCGCT TCTACTCGGA AAAAATGGGC GATATCGTTA CCGGGCGTCT GTCCGAGAGC
TTTGCCAACT TGATGGACTA CGGTTTTACC GCCGGGATGG AAGAAAATCT CGACGACGTG
GCCAAGGGGC AGCGCGACTG GAAGAACGTG CTGGACGAGT TCTACGGTGA TTTCCGCAAG
AAGCTGGAAG TGGCCGAAGC CCCGGACAGC GGCATGCGTG CCAATCAGCC GGTGATGACC
GATATTCCGT GCAAGGTGTG CGCTCGTCCG ATGCAGATCC GTACCGCCTC GACGGGCGTG
TTTCTCGGTT GCTCCGGCTA CAGCCTGCCG CCCAAGGAAC GCTGCAAGGC GACTGTCAAT
CTGACCCCCG GTGATGAAAT TGCCGATGAT GATGACGAGT CCGAATCGCG TGTTCTGCGC
GGCAAGCATC GCTGCCCGAT CTGCAGTACG GCGATGGACG CCTACCTGCT GGACGAGAAG
CACAAGCTGC ACATCTGCGG TAACAACCCG GATTGCACAG GTTACGAGAT TGAAGAGGGT
ACTTACCGGA TCAAGGGCTA CGAAGGCCCG AGCCTGGAGT GTGACAAGTG CGGCAGCGAG
ATGCAGCTCA AGACCGGTCG TTTCGGCAAG TTCTTCGGTT GCACCAACGC CGAGTGCAAG
AACACTCGCA AGCTGCTGAA AAGTGGCGAT GCAGCACCGC CGAAAATGGA CCCGGTGAAG
ATGCCGGAGC TCAAGTGCGA CAAGGTTGAC GACACCTACA TCCTGCGTGA CGGCGCTTCG
GGTCTGTTCC TGGCTGCCAG CCAGTTCCCG AAAAACCGTG AAACCCGCGC ACCGCTGGTC
GCCGAGATCG CGCCGCACAA GGACGAGATC GATCCGAAGT ACCACTTCCT CTGCGAAGCG
CCGAAGCAGG ACCCGGACGG TCGTCCGACG GTGATCCGTT ACAGCCGCAA GACCAAAGAG
CAGTATGTGC AGACCGAAGT GGAAGGCAAG CCTACCGGCT GGCGCGCGTT CTACGATGGC
AGTGCCTGGA AGGTTGAAGA CAAGCGTTGA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGNQYVVKSS IGHIRDLPTS GSASAAKDPA AKRGKAAAGE
GPVLTPKEKA QRQLVSRMGV DPEHGWKAKY EILPGKEKVI EELRKLAKDA DTIYLATDLD
REGEAIAWHL REAIGGDDSR YKRVVFNEIT KKAIQEAFSR PGELDIARVN AQQARRFLDR
VVGYMVSPLL WQKVARGLSA GRVQSVAVKL VVEREREIRA FNPEEYWEIH ADLGTAKGAN
VRFDVAREKG EAFKPLNEKQ AMAALEKLKA SSYSIVKRED KPTSSKPSAP FITSTLQQAA
SNRLGFGVKK TMMMAQRLYE AGYITYMRTD STNLSADAVS MARDYIETEF GKKYLPEAAN
VYSSKEGAQE AHEAIRPSDV NTHPSKLTGM ERDAERLYEL IWRQFVACQM LPAQYLSTTV
TVAAGDFELR AKGRILKFDG YTRALPQMAK PGDDDVLPDM AQGEVLKLNT LDPSQHFTKP
PARYSEASLV KEMEKRGIGR PSTYAAIIST IQDRGYVALH NRRFYSEKMG DIVTGRLSES
FANLMDYGFT AGMEENLDDV AKGQRDWKNV LDEFYGDFRK KLEVAEAPDS GMRANQPVMT
DIPCKVCARP MQIRTASTGV FLGCSGYSLP PKERCKATVN LTPGDEIADD DDESESRVLR
GKHRCPICST AMDAYLLDEK HKLHICGNNP DCTGYEIEEG TYRIKGYEGP SLECDKCGSE
MQLKTGRFGK FFGCTNAECK NTRKLLKSGD AAPPKMDPVK MPELKCDKVD DTYILRDGAS
GLFLAASQFP KNRETRAPLV AEIAPHKDEI DPKYHFLCEA PKQDPDGRPT VIRYSRKTKE
QYVQTEVEGK PTGWRAFYDG SAWKVEDKR
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