| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3485 |
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| Symbol | |
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| ID | 1185150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3933269 |
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| End bp | 3935545 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637394838 |
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| Product | lipase family protein |
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| Protein accession | NP_793265 |
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| Protein GI | 28870646 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG3675] Predicted lipase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0992541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGTAC AGTCTATAAA GACGTGGGAA AAACCATTTT TCAATAACCG CATACACGCC
TGCCCTATGA GTGGCCACTC AGTAAGCTTT CAGCTTGTTG ATGAGTTTGG GGATGGTAAG
CCCTATGCTG GCCTAGCTTA CGAAGTCATT GATTATGAAG GCGTTCTATA CTCTGGAAAA
CTCGATGCGA ATGGTTCAGG AAAGGTAGAT AACCATTACT GTGGCCCTGT CGTGCTGAAA
ACATGTGAAG AATATGTAGG GGAGGATGAT TTCTATACCG CTTTGAGTGG TAGGGGTAGC
TATCCGCTGC CTATCACTGA ACTTCAAGTT CGCGCCGAGA AAACCCGCTT TTCTAACAAA
TCTGGTGTTC GGACAAGGTC TAATCCGGCT CAAAGCGAAG CGGACGCATT CTGCCAGGTC
GAAGTGAGTG AGCTGGTGAA GCATGCCTGT CATTTACCTC CGATAGTTGA CCGCAACTTT
CCGCCAAATG AGTACGTGCG CAATCTGATG CAGACGCCTC CAGAGGATGT CGGAGCTGGT
GAGTCTGGAT TTGGCCCAAA ACCAGCCAGG GTGTACGGAA TTGGTCTTCT TCCGAATAAG
CACCACGTGC TTGAGGTTCG TCCTTTAAGG GCCTTGCGAC CTGCGCTGTC AACTGACAGC
GAGTTTTGCG CCTTGAACCT TTACCAGCTA GCGCTAATGG CAACATTGAG CTACAGCGAT
TTCGGTCAGA AACCAGATCT CTTTAAGGTA AAAAGCGACT CAGACGAAGC CTATGTGGTA
GAAGCCGATA CTGTTAGTTT CCCCTTGCAG CCAAGTGTCG GTAACTGGTT TGGTAACACG
CTTTCAAAAT TTGAAGAGCT TTGGCAGGTC GATGCGGCCC AAGCAGGCGG AAAAAATTAC
TATCCGCTCT ATGAGGAGGT TGCTTACTCA AAACGGTTGG AGATTGTACC TTTCGATCCA
GATCTCTACC CCGAGGTAAA TAGACCGAGC CTTGGAGATG ATCAGGAGCA TCCCGCGAAA
ATTCATTTCT TCGATGACAC AACATCGAAA AATGGTACCG ATACTCAAGC GTTCATCACG
CACCATGACG AGATCGTCTT GCTTTCTGTC CGAGGCACTG CGAGCACTTC TGATGCATTT
CGTGACCTAG ATGCTGCCCA GGTTCCTTTT GAGGAAGGTG TAGGCAAGGT TCATAACGGT
TTCTATGGAT CGGCAAAAGC TGTTATCAAC TTTGTGACCA GTTACCTGGA TAGATTCCAT
GTCGGCCAAA AGGTGATTGT TACCGGCCAT AGTTTGGGTG GTGCTGTTGC TTTCTTGGTT
GCCGAAATGC TTCGGCGCAG GAAGGGTTAT GACTATGACA TCGTGCTTTA TACGTATGGT
GCGCCGCGAG CCGTTGATGA GACATTTGCT ACTGCCGCTA CTGCCTTGAT TCATCATCGC
ACAGTGAATC ACACCGACCC GGTGCCTAGT GTGCCAACCA CCTGGATGAA CACATCAAAG
CCGGTTTACA TCACAGGAGC TATCGTGACG TTCGTCAACG TACCAATCGG TCTGGCGCTG
TTTGGAGGAG GCATTGCTAA TTTGACAGGG GAGCCTTATA CGCACCACGG CAAGCTGCGC
CATTTTATGC CTGTCTCGTT TGCTGATGGG CATAAGTCCT CGATCATATG GGAGCCTGGT
TGCGATACGA TCACAGAGCA TGCAGCATGC ACCGTCGCGC TGCAGCAGAA GAGTGGACTT
CCGAAGCGTG GCGGAACACT TCGCCAGATT ATTGACAACG CCAACCATAA AATGGTTGTG
AGCTACATCC CAGCCTGCTG GGCTGTCTTG CGGCGCTACC AGGAATCACA GGAGTTCAAG
CGCAGCTTGG TAACCGAGCG TGAATTTCGT TGGGTTGATG ACGCTCTGGA GAGTATTAGC
CTGCAATTGC AGGCCAAAGA GCGTCAATTC ACGATGCAGG CTCTGGAATC TCAAGTCGAA
GCGCAAAAGC AGGCATTACG TGATGAAAGA AGTAAGATTC AAGAGACACG TGACCGCTTG
GGAACACTTC GATTCACAAA GGCGACTGAA ACTCAAGTTT ATGGTCTGGC TGCAGCAGTA
CCTGAGGCCC TAGCGGTAAA TCTCGAGCGG TGGAGACTAC ACGCTATCAA CACCACGCTT
GAGCAATTGG CGATGGCTCC TCCAGATGCG GACAGTCACG ACAGAGCTGT TGCTTCTATC
ACAGGCGGCC ACATAATCGG TGCTCCTAGT CATTTCGACG TCGATTCTTT CGCCTAG
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| Protein sequence | MTVQSIKTWE KPFFNNRIHA CPMSGHSVSF QLVDEFGDGK PYAGLAYEVI DYEGVLYSGK
LDANGSGKVD NHYCGPVVLK TCEEYVGEDD FYTALSGRGS YPLPITELQV RAEKTRFSNK
SGVRTRSNPA QSEADAFCQV EVSELVKHAC HLPPIVDRNF PPNEYVRNLM QTPPEDVGAG
ESGFGPKPAR VYGIGLLPNK HHVLEVRPLR ALRPALSTDS EFCALNLYQL ALMATLSYSD
FGQKPDLFKV KSDSDEAYVV EADTVSFPLQ PSVGNWFGNT LSKFEELWQV DAAQAGGKNY
YPLYEEVAYS KRLEIVPFDP DLYPEVNRPS LGDDQEHPAK IHFFDDTTSK NGTDTQAFIT
HHDEIVLLSV RGTASTSDAF RDLDAAQVPF EEGVGKVHNG FYGSAKAVIN FVTSYLDRFH
VGQKVIVTGH SLGGAVAFLV AEMLRRRKGY DYDIVLYTYG APRAVDETFA TAATALIHHR
TVNHTDPVPS VPTTWMNTSK PVYITGAIVT FVNVPIGLAL FGGGIANLTG EPYTHHGKLR
HFMPVSFADG HKSSIIWEPG CDTITEHAAC TVALQQKSGL PKRGGTLRQI IDNANHKMVV
SYIPACWAVL RRYQESQEFK RSLVTEREFR WVDDALESIS LQLQAKERQF TMQALESQVE
AQKQALRDER SKIQETRDRL GTLRFTKATE TQVYGLAAAV PEALAVNLER WRLHAINTTL
EQLAMAPPDA DSHDRAVASI TGGHIIGAPS HFDVDSFA
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