| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3482 |
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| Symbol | |
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| ID | 1185147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3929574 |
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| End bp | 3931601 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637394835 |
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| Product | Rhs element Vgr protein |
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| Protein accession | NP_793262 |
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| Protein GI | 28870643 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0192027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGCGC CTGGAAATTC CGCGCACTTT GTATTACTGA TCCCTTCCGT TCGAAACGAT
TTTAAAGTGC TGGCTTTTGA TGGCGTTGAA GCCATCAGCA CGCTCTATGC GATAAAAATC
GAATTGGTCA GCGAGAACTC TGATTTTGAC CTGGAAAGCC TGCTCAGCCG GCAGGCATTT
CTTCAGTTCG GGCTAAACGG AGAAGGCATT CACGGCCTTA TTGAGGACGT TTTCGTCGGT
GACGCCGGTA AGCGTCTTAC CCGCTATCAC TTGACGCTGG TTCCAGCGTT GCACTACCTG
CAGTTCAGCC ACAACCAGCG GATTTTCCAG AACCTGACCG TTCCAGAAAT CGTCGCACAG
GTATTGAATG GCCACGGGCG TCAGTCAGAC ACCTTCAATT TTAAAGTCTC CATCAGCCCC
GTGCGCGAGT ACTGCACGCA GTACGGGGAA AGCGACTACG AGTTCATTCA GCGGCTGTGT
GCCGAGGACG GCATTGCCTG GCACCACCAG CACACCCAGG AAGGGCATCA GCTGGTTTTT
ACGGATGATC AGACCTTCTT TCCCACGCTT GGCGATACGC CTTACAAGCA AGGCTCTGGG
CTCGCTGCAG ACAAGCCAGT GGTCTACCAG TTCTCGATGC GTTTCAATAC TCGCACCAGT
ACCACAACGC GTCGTGGCTA CGATCTCAAG CGTCCCAGCA TGCTTCTTGA GAGCGCTTTC
ACTGCCGAAT TCACTCCAAA GCTGGAGGAT TATCGCTATC CCGAGCTAAT CGAGAATGAA
AAGCTTGGTA AGCAGCTTGC CCGCCAGGGG CTTGAGCGAC ATCGCGTTGA CTACCAACTG
GCTGAAGGGA GTAGCGACCA GCCTGCGCTG CGTAGCGGCC ATTTCTTCAA TCTGGTTGAG
CACCCACGCA AGCGTTGCAA CGACTTATGG TTGTTGGTAG GTGTTAAGCA CGAAGGTAAG
CAACCCCAAG CGCTCGAAGA GTCCGTTAGA AGTAATACCA GCCCAGCGGA TGGCTTCACT
CAGGGCTACC GTAATACTTT TAGCGCGATT CCGTGGGATG TCTTTTACCG CCCGCCGATG
CCTGAGCGTA GATCTATCTT GGTGAGTCAG ACGGCTCGCG TAACTGGCCC AGCGAATGAA
GAAATATTCT GCGACGAATA TGGTCGCGTA AAAGTCGAAT TTCATTGGGA CAGGGCAGAG
CTGAATAGCG ATAACAGCAG CTGTTGGTTG CGAGTGGCCT CAAGCTGGGC AGGAGAGGGA
TTCGGTTCGG TGACTATCCC GCGTATTGGA ATGGAGGTTG TTGTAACCTA TTTGGAAGGG
GATCCTGACA AGCCCCTAAT CACAGGTTGC GTAACGAACA AAGTCAACGC TCCGGCCTAC
CCGTTGCCGG CGAATAAAAC GAAGACCGTA CTTCGTACGC ACAGCTCTCC GCACAATGGT
GGATTCAACG AACTAGCTAT TGAGGATCGC GCTGGACAGG AAAAAATCTC CTTCCGCGCA
CAGCGAGATT TTGATGAGCT GATCCTCAAC GATAGCGTTA GCCATATTGG AAATGATCAG
TCCACGCAAG TAGACCGCAA CAGCTCCAGC CTCATCAAGG GTGACGAGAC GCATACAACC
AATGGTGTGC GAAACACAGT CATCGGTGGC AATGAGCTGA TTTCGGTTAG TGGAGACACT
AGCGTTACGT CGGGCGGAAA CCTGATTATT CAAGTTGGAT CTCAGGCTCA CGTCACCGCT
GTAAACGTTG TTATCAATGC AGGTATGAGT CTCACGCTTC AGGCCGGCGG TAACCACATT
GTGATTAGCT CTGGAGGGAT CTTCAGTAGC GTACCAATCG TACAGGGCGG ATCGCCGATG
GCGGGTGTTT CACCTCTGCA GGCCCTGCAG GCTCCATCGA CTGAAGTCCC AGCCATTATC
GCCAGCCCGC GCTCTATCGT TGCCGCTGCC AGGCAACAGG CGGCGGACTT TTGTCCGCTC
TGTGAGGCCT GCCTGAATGG ACAATGCAAA ATTGGAGAGA TCGCATGA
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| Protein sequence | MFAPGNSAHF VLLIPSVRND FKVLAFDGVE AISTLYAIKI ELVSENSDFD LESLLSRQAF
LQFGLNGEGI HGLIEDVFVG DAGKRLTRYH LTLVPALHYL QFSHNQRIFQ NLTVPEIVAQ
VLNGHGRQSD TFNFKVSISP VREYCTQYGE SDYEFIQRLC AEDGIAWHHQ HTQEGHQLVF
TDDQTFFPTL GDTPYKQGSG LAADKPVVYQ FSMRFNTRTS TTTRRGYDLK RPSMLLESAF
TAEFTPKLED YRYPELIENE KLGKQLARQG LERHRVDYQL AEGSSDQPAL RSGHFFNLVE
HPRKRCNDLW LLVGVKHEGK QPQALEESVR SNTSPADGFT QGYRNTFSAI PWDVFYRPPM
PERRSILVSQ TARVTGPANE EIFCDEYGRV KVEFHWDRAE LNSDNSSCWL RVASSWAGEG
FGSVTIPRIG MEVVVTYLEG DPDKPLITGC VTNKVNAPAY PLPANKTKTV LRTHSSPHNG
GFNELAIEDR AGQEKISFRA QRDFDELILN DSVSHIGNDQ STQVDRNSSS LIKGDETHTT
NGVRNTVIGG NELISVSGDT SVTSGGNLII QVGSQAHVTA VNVVINAGMS LTLQAGGNHI
VISSGGIFSS VPIVQGGSPM AGVSPLQALQ APSTEVPAII ASPRSIVAAA RQQAADFCPL
CEACLNGQCK IGEIA
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