Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3460 |
Symbol | |
ID | 1185125 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3902047 |
End bp | 3902979 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394813 |
Product | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
Protein accession | NP_793240 |
Protein GI | 28870621 |
COG category | [C] Energy production and conversion [H] Coenzyme transport and metabolism [R] General function prediction only |
COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAACGG TATTGGTGCT GGTCGAAAAT CTGGACACGT ATTTGCCGAT TCTGGAAAGC AGCGGCTTCC AGTTGATTCG CGCCCCGACG GCCGAAAAAC GCGCCGAAGC GATTGCCACT CACGGGCAGA ACATCAGCGC TGTTGTCACG CGTGGGCCAC TGGGGTTTTT CGCCGGGGAA ATGGACGCGT TGCCGCACCT GCGCATCATT TGTGTGAGCG GTGCCGGCTA CGAGAAGGTC GATTTGCCCG CTGCACAGGC ACGCGGTATT ACCGTCACCA ATGGCGCCGG GGTCAACGCG CCTACCGTGG CCGATCATGC ACTGGCATTG TTACTTTCGC TGGTGCGCGA CATTCCACAG GCAGACGCCT CGGTACGCCG CAGTGAGTGG CGCAAGGCTG TGCGTCCCTC ACTGGCAGGC AAGCGCCTGG GGATCATCGG CCTGGGGGCG GTAGGTTTGG CGATCGCCAA GCGTGCGGCT GCATTCGACA TCGTCATCGG CTATCACAAC CGCAAGCCGC GTCACGACTG CAGCTACACC TGGCATGAAA CGGCGCAGGC GCTGGCGGCC GAGTCGGACT TTTTGATGAT TGCCACGCCC GGTGGCAACA GCACGCAACA TCTGGTCGAT GCGCAGGTGC TGGCAGCGCT GGGGCCTGAC GGTTTTCTGG TCAATATTGC CCGCGCCAGC GTTGTGGACA CCGGCGCGCT GGTCAGTGCG CTTGAGAATG AGCAGATTGC CGGGGCTGCG CTGGACGTTT TCGATGACGA GCCGAAGGTG CCGGACGTGT TCAAGACCCT GAACAACGTG GTGCTCACGC CGCATGTGGC AGGCTTGTCG CCCGAAGCGT CGAGGGACAG CGTGCAGAGG GTCAACGATA ACCTGCTGGC GTTCTTTTCC GGCCAGCCGG TGCTCACGCC CATCACCGAG TGA
|
Protein sequence | MTTVLVLVEN LDTYLPILES SGFQLIRAPT AEKRAEAIAT HGQNISAVVT RGPLGFFAGE MDALPHLRII CVSGAGYEKV DLPAAQARGI TVTNGAGVNA PTVADHALAL LLSLVRDIPQ ADASVRRSEW RKAVRPSLAG KRLGIIGLGA VGLAIAKRAA AFDIVIGYHN RKPRHDCSYT WHETAQALAA ESDFLMIATP GGNSTQHLVD AQVLAALGPD GFLVNIARAS VVDTGALVSA LENEQIAGAA LDVFDDEPKV PDVFKTLNNV VLTPHVAGLS PEASRDSVQR VNDNLLAFFS GQPVLTPITE
|
| |