| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3452 |
|---|
| Symbol | |
|---|
| ID | 1185117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3895494 |
|---|
| End bp | 3896102 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637394805 |
|---|
| Product | transporter, LysE family |
|---|
| Protein accession | NP_793232 |
|---|
| Protein GI | 28870613 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCTCT CTTTCGATTT GCTTCTCGCT TTTGCGTTGT TTGCCTTCGT CACATCGGTG
ACGCCCGGGC CGAACAATAT GATGCTGCTG GCTTCCGGCG TCAATTTCGG TTTCAGCCGA
ACCCTCCCGC ACATGCTTGG CATCAGCATC GGTTTTTTCA TATTGGTACT GGCTGTCGGT
TTTGGTCTGG GTAGCGTGTT CAAGGCGTGG CCGATTCTCT ATACGGTTTT GCGCTATGTG
GGCGCGGCCT ATCTGCTGTA CCTGGCCTGG AAAATCGCCA CGTCAGGCCC TGCTGCCGAG
AACACTGACA GCCAGGGCAA GCCGTTCAGT TTCATGAGCG CGGCGCTTTT TCAGTGGGTC
AACCCCAAGG CCTGGATCAT GGCGATCGGT GCAATCAGCA CGTACACCCC GATGCAGGGT
TACTTCTACA ACGTGGTGGT GATCTCGGCG GTGTTCGCGT TGATCAACCT GCCCAGCGTA
GGTATCTGGG CCGGTTTTGG CAGTTTGTTG CGCAACGTTC TGCGCGATCC GCTGGGCCTG
CGTATTTTCA ACGGCGTGAT GGCTGCGCTG CTGGTCGCAT CGCTCTATCC GTTGTTTGTC
GAGCATTAA
|
|---|
| Protein sequence | MVLSFDLLLA FALFAFVTSV TPGPNNMMLL ASGVNFGFSR TLPHMLGISI GFFILVLAVG
FGLGSVFKAW PILYTVLRYV GAAYLLYLAW KIATSGPAAE NTDSQGKPFS FMSAALFQWV
NPKAWIMAIG AISTYTPMQG YFYNVVVISA VFALINLPSV GIWAGFGSLL RNVLRDPLGL
RIFNGVMAAL LVASLYPLFV EH
|
|---|
| |