Gene PSPTO_3367 details

Gene Information

• Locus tag: PSPTO_3367
• Symbol: nuoCD
• ID: 1185026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3805020
• End bp: 3806801
• Gene Length: 1782 bp
• Protein Length: 593 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637394718
• Product: NADH dehydrogenase I, C/D subunit
• Protein accession: NP_793150
• Protein GI: 28870531
• COG category: [C] Energy production and conversion
• COG ID: [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7; [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit
• TIGRFAM ID: [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C; [TIGR01962] NADH dehydrogenase I, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.812668
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGCAG ACAACGCTCT GTACATCCCG CCTTACAAGG CTGACGACCA AGATGTCGTC 
GTTGAACTGA ATAACCGTTT TGGCGCCGAG GCCTTCACTG CCCAGCCGAC GCGCACCGGC 
ATGCCTGTGC TGTGGGTCGA GCGCGCCCGA CTGTTCGAAA TCCTGACGTT CCTGCGTAAC 
GTGCCAAAGC CTTACTCCAT GCTCTACGAC CTGCATGGCG TTGACGAGCG TTTGCGCACT 
AATCGCCGGG GCCTGCCGGG TGCCGACTTC ACCGTTTTCT ATCACCTGCT GTCGATCGAG 
CGAAACAGCG ACGTGATGAT CAAGGTGGCG CTGTCCGAAA GCGACCTGAG CGTGCCGACC 
ATCACCAGCA TCTGGCCGAA TGCCAACTGG TACGAGCGCG AAGTCTGGGA CATGTTCGGT 
ATCGACTTCC CGGGCCACCC GCACCTGAGC CGCATCATGA TGCCGCCGAC CTGGGAAGGT 
CACCCGCTGC GCAAGGACTT CCCTGCCCGC GCAACCGAGT TCGACCCTTA CAGCCTGACC 
CTCGCCAAAC AGCAACTGGA AGAAGAAGCC GCGCGCTTTC GCCCGGAAGA CTGGGGCATG 
AAGCGCTCCG GCCAGAACGA GGACTATATG TTCCTCAACC TGGGGCCGAA CCACCCTTCT 
GCTCACGGTG CATTCCGCAT CATCCTGCAA CTGGACGGCG AAGAAATCGT CGACTGCGTT 
CCGGACATTG GTTACCACCA CCGTGGTGCC GAGAAAATGG CCGAGCGTCA GTCCTGGCAC 
AGCTTCATCC CGTACACCGA CCGTATCGAT TACCTCGGCG GCGTGATGAA CAACCTGCCG 
TACGTGCTCT CGGTCGAGAA GCTGGCGGGC ATCAAGGTGC CAGAGAAAGT CGACGTCATC 
CGCATCATGA TGGCCGAGTT CTTCCGTATC ACCAGCCACC TGCTGTTCCT GGGCACCTAC 
ATTCAGGACG TGGGCGCCAT GACGCCGGTG TTCTTCACGT TCACCGACCG CCAGAAAGCC 
TACACCGTGA TCGAGGCCAT CACCGGCTTC CGCCTGCATC CGGCCTGGTA TCGCATCGGC 
GGGGTTGCTC ACGACCTGCC ACGCGGCTGG GAAAAACTGG TCAAGGACTT CGTCGACTGG 
CTGCCAAAGC GCCTCGACGA ATACACCAAG GCCGCCCTGC AGAACAGCAT TCTCAAAGGC 
CGTACCGTCG GCGTCGCTGC CTACAACACC AAAGAGGCCC TGGAATGGGG CGTCACCGGT 
GCTGGCCTGC GTTCCACCGG CTGCGACTTC GACCTGCGCA AGGCCCGTCC TTACTCGGGC 
TACGAGAATT TCGAGTTCGA AGTCCCGCTG GCCGCGAACG GCGATGCCTA TGACCGCTGC 
ATGGTCCGCG TCGAGGAGAT GCGCCAGAGC ATCAAGATCA TAGACCAGTG CATGCGCAAC 
ATGCCGGAAG GCCCGTACAA GGCGGATCAC CCGCTGACGA CCCCGCCGCC GAAAGAGCGC 
ACGCTGCAAC ACATCGAAAC CCTGATCACG CACTTCCTGC AGGTTTCGTG GGGTCCGGTC 
ATGCCGGCTA ACGAATCCTT CCAGATGATC GAAGCGACCA AGGGTATCAA CAGCTATTAC 
CTGACGAGCG ACGGCGGCAC CATGAGCTAC CGTACCCGGA TCCGCACCCC AAGTTTCCCG 
CACCTGCAGC AGATCCCTTC GGTGATCCAG GGCAGCATGG TCGCGGACTT GATCGCGTAT 
CTGGGTAGTA TCGATTTCGT TATGGCCGAC GTGGACCGCT AA 

 

Protein sequence

MTADNALYIP PYKADDQDVV VELNNRFGAE AFTAQPTRTG MPVLWVERAR LFEILTFLRN 
VPKPYSMLYD LHGVDERLRT NRRGLPGADF TVFYHLLSIE RNSDVMIKVA LSESDLSVPT 
ITSIWPNANW YEREVWDMFG IDFPGHPHLS RIMMPPTWEG HPLRKDFPAR ATEFDPYSLT 
LAKQQLEEEA ARFRPEDWGM KRSGQNEDYM FLNLGPNHPS AHGAFRIILQ LDGEEIVDCV 
PDIGYHHRGA EKMAERQSWH SFIPYTDRID YLGGVMNNLP YVLSVEKLAG IKVPEKVDVI 
RIMMAEFFRI TSHLLFLGTY IQDVGAMTPV FFTFTDRQKA YTVIEAITGF RLHPAWYRIG 
GVAHDLPRGW EKLVKDFVDW LPKRLDEYTK AALQNSILKG RTVGVAAYNT KEALEWGVTG 
AGLRSTGCDF DLRKARPYSG YENFEFEVPL AANGDAYDRC MVRVEEMRQS IKIIDQCMRN 
MPEGPYKADH PLTTPPPKER TLQHIETLIT HFLQVSWGPV MPANESFQMI EATKGINSYY 
LTSDGGTMSY RTRIRTPSFP HLQQIPSVIQ GSMVADLIAY LGSIDFVMAD VDR