Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3347 |
Symbol | |
ID | 1185006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3782472 |
End bp | 3783794 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394698 |
Product | ATPase, AAA family |
Protein accession | NP_793130 |
Protein GI | 28870511 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.22534 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCTGT TCAGTCGCGA ACCGATAGCT CAGCCTCTGG CTGCACGTTT GCGTGCTACC AATCTGGATG AGTATGTCGG TCAGGAGCAC GTACTGGCCC ACGGCAAGCC TCTGCGCGAG GCGCTGGAAC AGGGCGCGCT GCACTCGATG ATCTTCTGGG GCCCGCCCGG CGTCGGCAAG ACGACGCTGG CCAGGTTGTT GGCCAAGGTT TCGGATGCAC ATTTCGAGAC TGTTTCGGCG GTGCTGGCCG GGGTCAAGGA AATTCGCCAG GCCGTGGAAG TCGCCAAGCA ACAGGCCGGG CAATACGGCA AGCGCACGAT TCTGTTTGTC GACGAAGTGC ATCGCTTCAA CAAGTCGCAA CAGGATGCGT TTCTGCCTTA CGTTGAGGAC GGCACGCTGA TTTTCATCGG CGCAACCACT GAAAACCCTT CGTTCGAACT CAATAACGCC TTGTTGTCAC GAGCTCGCGT CTACGTGCTC AAAAGCCTCG ACGAGGCGGC GTTGCGCAAA CTGGTCAATC GCGCCCTGAC CGAAGACCGC GGGCTCGGCC AGCGCAAGCT GACCTTGAGT GACGAAGGAT TCGCGATGCT TATGGCCGCT GCTGATGGTG ACGGCCGGCG CATGCTCAAC CTGCTGGAAA ACGCCTCCGA TCTGGCCGAG GATGGCAGCG AGATTGATAT CGAGTTGTTG CAGAGTCTGC TAGGCGACAG CCGACGCCGC TTCGACAAGG GCGGCGAGGC GTTTTATGAC CAGATATCGG CCCTGCACAA ATCCATTCGC GGCTCCAACC CGGATGCCGC CCTGTACTGG TTTGCGCGCA TGATCGACGG CGGGTGCGAC CCGCTTTACC TGGCGCGGCG CGTGGTGCGT ATGGCCAGTG AAGACATCGG CAATGCCGAT CCGCGCGCGC TGCCATTGTG CATGTCGGCG TGGGATGTGC AGGAACGACT CGGCAGCCCC GAGGGTGAGC TGGCGGTTGC GCAGGCCATT GTCTACCTGG CCTGTGCGCC GAAAAGCAAC GCGGTCTACA TGGCATTCAA GGCTGCGATG CGCGAAGCGG GCGAACACGG ATCGCTGGAG GTTCCGTTGC ACTTGCGCAA CGCGCCGACC AAGCTGATGA AACAACTCGG TTACGGTGAA GAATATCGTT ACGCCCACGA CGAGCCGGAA GCTTACGCTG CAGGCGAAGA CTACTTTCCG GACGAACTGG AGCCACGCCA GTATTATCAA CCCGTGCTGC GCGGCCTTGA GCTCAAGATC GGTGAGAAGC TCAGGCATCT GAACGCGCTG GACACCGCCA GCGCTCGCCA GCGGAGAAAG TGA
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Protein sequence | MDLFSREPIA QPLAARLRAT NLDEYVGQEH VLAHGKPLRE ALEQGALHSM IFWGPPGVGK TTLARLLAKV SDAHFETVSA VLAGVKEIRQ AVEVAKQQAG QYGKRTILFV DEVHRFNKSQ QDAFLPYVED GTLIFIGATT ENPSFELNNA LLSRARVYVL KSLDEAALRK LVNRALTEDR GLGQRKLTLS DEGFAMLMAA ADGDGRRMLN LLENASDLAE DGSEIDIELL QSLLGDSRRR FDKGGEAFYD QISALHKSIR GSNPDAALYW FARMIDGGCD PLYLARRVVR MASEDIGNAD PRALPLCMSA WDVQERLGSP EGELAVAQAI VYLACAPKSN AVYMAFKAAM REAGEHGSLE VPLHLRNAPT KLMKQLGYGE EYRYAHDEPE AYAAGEDYFP DELEPRQYYQ PVLRGLELKI GEKLRHLNAL DTASARQRRK
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