Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3328 |
Symbol | tliF |
ID | 1184986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3763908 |
End bp | 3765278 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394678 |
Product | ABC transporter, permease protein |
Protein accession | NP_793111 |
Protein GI | 28870492 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.262756 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGCGTT ATCCTCTGAA AGCCGCTTTG CTGACGGCCA TCCTGCTGGG TACTGCGCCG TTGAGTCATG CGATGGGACC GTTTCAGGTC TATGAGCTGG CGCTACGCAA TGACCCGACC TACCTCGGCG CACTCAAGGA ACGCGATGCG GGCCTTGAGA ACCGGATCAT TGGTCGCGCC GGCCTGTTGC CTCGCGTGTC GTACAACTAC AACAAAGGGC GCAACGATTC AAAAGCCACC CTTAAAGGTG GCCGCGAAGA CACCACGGAT CATCGCCACT ACAACAGCTT TGGTTCAAGC CTGACGATCC AGCAGCCGTT GATTGATTAC GAGGCCTACG CCAATTACCG CAAGGGCCTG GCTCAGGCAC TGTTTGCCGA CGAGACCTTT CGCAGCAAGA GTCAGGAATT GCTGGTGCGG GTGCTGACCC TTTACACCCA GGCACTGTTT GCTCAGGACC AGATCAGCAT CGCGCGCGCC AAACAGCAGG CGTTCGAGCG CCAGTTTGCG CAGAACCGGC AGATGTTTCA GCAAGGCGAG GGCACCCGTA CCGACATTCT GGAAGCTGAA TCGCGCAACG AGCTGGCGAT TGCCGAGCAG ATCGAAGCCA GCGACGAACA GGACGCTGCC TTGCGTGAAC TGGCAGCGTT GCTGGGCGAG CCGGGTATCG ATGTTTCGCA ACTGGACCCT TTGAAGGACA GTTTTCAGGC GTTGGTACTC GCACCTTCAA GTTTCACCGA GTGGCATGCG CTGGCCGCGG CCAATAGCCC GATACTTGCG TCGCAGCGTC AGGCAGTGGA AGTGGCGCGC TATGACGTGG AGCGCAATCG CGCCGGTCAT CTGCCGACGG TGAATGCCTT CGCGAGCATT CGTCAGAACG AGTCGGACAG CGGCAACACC TACAATCAGC GTTACGACAC TAACACCGTG GGCATCGAGG TCAGTCTGCC GTTGTACGCC GGTGGCGGCA CCAGTGCTTC GGTGCGTCAG GCCAACAGCA AGCGTGAACA GGCTGAATAC GAGCTGGAAG GCAAGACCCG TGAAACCCTG ATCGAGCTGC GTCGCCAGTT CAACGCCTGC GCGTCCGGGG TGAGCAAGCT GCGCGCTTAT CAGAAAGCGT TGGTGTCGGC GCAGGCGCTG GTCGAATCGA CACGCCAGAG CATTCTGGGT GGCGAGCGCA TCAGCCTGGA TGCGCTCAAC GCCGAGCAGC AGCTCTACAG CACCCGGCGC GATCTGGCGA AAGCCCGTTA CGATTATTTG ATGGCGTGGA TCAAACTGCA TTACTACGCC GGTACGTTGC GCGACACCGA TCTGGCGCGC ATCGACGAGG CCTTCGTGCT GGCGCGCGAT GGCCGTGATC GGCAGCGGTA A
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Protein sequence | MMRYPLKAAL LTAILLGTAP LSHAMGPFQV YELALRNDPT YLGALKERDA GLENRIIGRA GLLPRVSYNY NKGRNDSKAT LKGGREDTTD HRHYNSFGSS LTIQQPLIDY EAYANYRKGL AQALFADETF RSKSQELLVR VLTLYTQALF AQDQISIARA KQQAFERQFA QNRQMFQQGE GTRTDILEAE SRNELAIAEQ IEASDEQDAA LRELAALLGE PGIDVSQLDP LKDSFQALVL APSSFTEWHA LAAANSPILA SQRQAVEVAR YDVERNRAGH LPTVNAFASI RQNESDSGNT YNQRYDTNTV GIEVSLPLYA GGGTSASVRQ ANSKREQAEY ELEGKTRETL IELRRQFNAC ASGVSKLRAY QKALVSAQAL VESTRQSILG GERISLDALN AEQQLYSTRR DLAKARYDYL MAWIKLHYYA GTLRDTDLAR IDEAFVLARD GRDRQR
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