Gene PSPTO_3319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3319 
Symbol 
ID1184977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3754165 
End bp3754809 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content60% 
IMG OID637394669 
Producttranscriptional regulator, TetR family 
Protein accessionNP_793102 
Protein GI28870483 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00311946 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCGGT ACGAACCCAC GGAAACGGGT ACGCCAGTCA CCCGACAGCG ACGCGCGCCC 
AAGGGCGAGA AGCGTCGCGA AGAATTGCTC GATGCCGCGT TGCAGGTGTT TTCCCTTGAG 
GGTTATACCG GCGCATCGGT GGCCAAAGTG GCGGCGATCG TCGGTATTTC GGTGGCGGGG 
CTGCTGCATC ACTTTCCCAG CAAGATCTCG CTGTTGATGG GTGTGCTGGA GCGGCGTGAT 
GAGGTCAATG GCCGGATTGC CGCCCAAGTG CGTACCGACA ACACCTTGAC CGGTCTGCTC 
GGTGGCCTGC GCGCGATCAA TCGCTCCAAT GCCACGGCGC CTGGTGTGGT GCGTGCCTTT 
TCGATTCTCA ACGCCGAAAG CCTGGTCGAC AGCCAGCCCG CGTATGAATG GTTTCAGACG 
CGCTATGAGC GCATTCATGC GCACTTGCTC GGGCAGTTTT CAGGTTTGGT GGAGCGGGGA 
GAAGTGCGGG CGGATGTGGA TCTGGACAAG GTGGTCCAGC AGCTTCTGGC CATGATGGAT 
GGCTTGCAGA TTCAGTGGTT ACGCTTTCCC GATCAGGTCG ATCTGATCGA ATGTTTCGAT 
GCCTACATTG CGCAGGTCGA TGCAACGGTA AGGGCTCGTC CCTGA
 
Protein sequence
MTRYEPTETG TPVTRQRRAP KGEKRREELL DAALQVFSLE GYTGASVAKV AAIVGISVAG 
LLHHFPSKIS LLMGVLERRD EVNGRIAAQV RTDNTLTGLL GGLRAINRSN ATAPGVVRAF 
SILNAESLVD SQPAYEWFQT RYERIHAHLL GQFSGLVERG EVRADVDLDK VVQQLLAMMD 
GLQIQWLRFP DQVDLIECFD AYIAQVDATV RARP