| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3285 |
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| Symbol | gudD |
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| ID | 1184943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3712842 |
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| End bp | 3714194 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394635 |
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| Product | glucarate dehydratase |
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| Protein accession | NP_793068 |
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| Protein GI | 28870449 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATTC AGCACTCCAA CATCACCGGC AAGGCCCCTG TCATCACCGA CATGCAGGTT
GTACCGGTGG CCGGCCATGA CGACATGCTG CTCAATCTCA GCGGCGCGCA CGGCCCTTAT
TTCACGCGTA ACATCGTCAT CCTCAAAGAC AACGCCGGGC ATGTGGGCGT CGGCGAAGTG
CCTGGCGGCG AACTGATTCG TCAGACCCTC GAAGACGCGC GCTCACTGGT GGTCGGCAGC
AGCATCGGCA CCTACCAGAA GATCCTCAAT GAGGCACGCA AAGCCTTCGC CGATCGCGAT
TCAGGCGGCC GAGGCCTGCA AACCTTCGAC CTGCGCATCG CCATTCACGC AGTCACCGCA
CTGGAGGCCG CGCTGCTTGA TCTGCTCGGT CAGCATCTGG ACGTACCGGT TGCCGCCCTG
CTCGGTGAAG GTCAGCAACG CGATCAGGTC GAGATGCTCG GCTACCTGTT TTATGTCGGC
GATCAGCGCA AGACCGACCT GGCCTATCGC AGCGAACCCG AGGCTGACAA CGACTGGTTC
CGCCTCCGCC ATGAAGAAGC GCTGACCCCA GAAGCAGTGG TGCGTCTGGC CGAAGCCGCG
CAACAGCGTT ACGGCTTTCA GGACTTCAAA CTCAAGGGCG GCGTGTTGAG CGGCGATGAG
GAGATCGAAG CCGTCACCGC ACTGGCCGAG CGCTTTCCCG AGGCACGCAT CACGCTGGAC
CCCAACGGCG CCTGGTCGCT CAAGGAAGCC ATCCGTCTGT GCCGCGATCA GCATCACGTG
CTGGCGTATG CCGAAGACCC GTGCGGTGCG GAAAACGGCT TTTCCGGTCG CGAAGTCATG
GCTGAATTCC GCCGCGCCAC CGGCCTGAAA ACCGCCACCA ACATGATCGC CACCGACTGG
CGTGAAATGG GCCATGCCAT TCAGTTGCAA TCGGTGGACA TTCCGCTGGC CGATCCGCAC
TTCTGGACCA TGCAGGGTTC GGTGCGTGTG GCGCAGATGT GCAATGAATG GGGCCTGACC
TGGGGCTCGC ATTCCAACAA CCACTTCGAT ATTTCGCTGG CGATGTTCAC CCAGGTTGCC
GCCGCAGCGC CGGGCAACAT TACGGCGATC GATACCCACT GGATCTGGCA GGACGGTCAG
CGCCTGACCA AGGCCCCGCT GCAAATCATC GGTGGCAAGG TCGCCGTACC GAAGAAGCCG
GGGTTGGGGG TCGAACTGGA CACCGACCAG TTGGCCAAGG CTCATGAACT CTATAAAGGC
ATGGGGCTGG GCGCGCGTAA CGACGCCGCA GCGATGCAGT TTCTGATCCC GGACTGGAAA
TTCAACAACA AGCAGCCTTG CCTGGTGCGC TGA
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| Protein sequence | MNIQHSNITG KAPVITDMQV VPVAGHDDML LNLSGAHGPY FTRNIVILKD NAGHVGVGEV
PGGELIRQTL EDARSLVVGS SIGTYQKILN EARKAFADRD SGGRGLQTFD LRIAIHAVTA
LEAALLDLLG QHLDVPVAAL LGEGQQRDQV EMLGYLFYVG DQRKTDLAYR SEPEADNDWF
RLRHEEALTP EAVVRLAEAA QQRYGFQDFK LKGGVLSGDE EIEAVTALAE RFPEARITLD
PNGAWSLKEA IRLCRDQHHV LAYAEDPCGA ENGFSGREVM AEFRRATGLK TATNMIATDW
REMGHAIQLQ SVDIPLADPH FWTMQGSVRV AQMCNEWGLT WGSHSNNHFD ISLAMFTQVA
AAAPGNITAI DTHWIWQDGQ RLTKAPLQII GGKVAVPKKP GLGVELDTDQ LAKAHELYKG
MGLGARNDAA AMQFLIPDWK FNNKQPCLVR
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