Gene PSPTO_3279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3279 
Symbol 
ID1184937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3704803 
End bp3706428 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content59% 
IMG OID637394629 
Productmethyl-accepting chemotaxis protein 
Protein accessionNP_793062 
Protein GI28870443 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.149652 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTAC GCAAACTCAC TATCGCTCGT CGTGCCGGTC TGGGTTTTAC CCTCATTTCC 
CTGTTGGTCG CATTGCTCGG CTGGTTTGCG TTGGCGCAGA TGTCGACCAT TCGCCAGAGC
GAAGTGGCCG TCGAAACCAA TTGGCTGCCA AGCATGCGAG TGGTCAATGA TATCCGTGAA
ATCATGCTGC GCATCCGGAC CATCTCCCTG CGCATGGCAC TGGACACCGA CCCTGCGAGC
ATTCCGACCT ATCGCGGGCA ACTGGACGTG CGTCTGGGCG ACCTGAACAA GAAGCTGGAC
ACCCTCAAGA CCTTCGTCGA CACCCCTGAA GAAAAGACCC TGAATGATCA GTTTCTGGTG
ACCATGGGCC AATACCGCAC GGCGCTGGAT CGCTCTTTCG TGCTGGCAGG CCAGGGCGAC
AGTGCCGGGC TGAACAAGCT GCTGCTGATC GACATGAAGC AGATTGTCGA CGGCTCCGGC
AAGCAGCTCA ATGACCTGGC CGATTTCTAT GTCACCAAGG TCGATGCCGA AGGCAAGTCG
GCCGAGGCCC AGTACGACAA ATCGCGCGAT ATCGTGATTA TCTTCGTGGC CCTCGCTGCG
CTGTGCACCA TTGGCCTGGC GCTGTGGCTG ACGCGTAGTA TCGTCAGCCC GTTGCAGCGC
GCAGTGACCG CTGCCGAGCA GGTTGCCGCA GGTGATCTGA CGCACAGCAT CGAGGTCGAC
GGCGAAGATG AAGTCACTCG CCTGTTGCGC GCCCTGGCAT TGATGCAGGG CAACTTGCGT
GACGCCATGC GTCATATCGG CAGTTCGGCC ACGCAACTGG CCTCGGCCGC CACCGAACTC
AACTCGGTCA CCGAGGACAG CTATCGCGGG CTCAACCAGC AGAACGCCGA GATCGATCAG
GCAGCCACTG CCATCAATGA AATGACTTCG GCAGTGGAAG AGGTGGCACG CAACGCAGTG
TCCACCTCGG ATGCTTCCAG CCAGTCCAGC AACTCGGCGC AGGCGGGCCA GACGCGGGTG
ATCGAGACCG TGCAGTCGAT CGAGATACTG ACCGATAACG TGCAGGCCAC TTCAACGCTG
GTGCAAAACC TGGCCAATCA GTCGCAGGAC ATTGGCAAGG TGCTGGATGT GATTCGTTCG
ATTGCCGAGC AGACCAATCT GCTGGCACTC AACGCAGCGA TCGAAGCGGC GCGCGCCGGT
GAGTCGGGGC GGGGCTTTGC GGTGGTGGCC GATGAAGTGC GGGCACTGGC GCATCGCACC
CAGCAGTCAA CGCTGGAAAT CGACTCGATG GTCAATGCCA TGCGCAGCGG TTCTGCCCAG
GCGCTGGAAT CGATGAACAC CAGCCGCGAG CGCGCCAGCT CGACATTGTC GCTGGCCAAG
GGCGCAGGCG AATCGCTGAG TGAAATTACT TCATCGATCA ATCAGATTTC CGAGCGCAAT
CTGGTGATTG CCAGCGCGGC TGAAGAGCAG GCGCAAGTGT CGCGTGAAGT TGACCGCAAC
ATCGTCAATA TTCGTGATCT GTCCATGCAA TCGACCCAGG GTGCCAACCA GATCAGCGCA
TCAAGCCATG AACTGTCGCG TCTGGCAGCG GACCTGAACC AGGTGGTCTT ACGCTTCAAG
GTGTAA
 
Protein sequence
MNLRKLTIAR RAGLGFTLIS LLVALLGWFA LAQMSTIRQS EVAVETNWLP SMRVVNDIRE 
IMLRIRTISL RMALDTDPAS IPTYRGQLDV RLGDLNKKLD TLKTFVDTPE EKTLNDQFLV
TMGQYRTALD RSFVLAGQGD SAGLNKLLLI DMKQIVDGSG KQLNDLADFY VTKVDAEGKS
AEAQYDKSRD IVIIFVALAA LCTIGLALWL TRSIVSPLQR AVTAAEQVAA GDLTHSIEVD
GEDEVTRLLR ALALMQGNLR DAMRHIGSSA TQLASAATEL NSVTEDSYRG LNQQNAEIDQ
AATAINEMTS AVEEVARNAV STSDASSQSS NSAQAGQTRV IETVQSIEIL TDNVQATSTL
VQNLANQSQD IGKVLDVIRS IAEQTNLLAL NAAIEAARAG ESGRGFAVVA DEVRALAHRT
QQSTLEIDSM VNAMRSGSAQ ALESMNTSRE RASSTLSLAK GAGESLSEIT SSINQISERN
LVIASAAEEQ AQVSREVDRN IVNIRDLSMQ STQGANQISA SSHELSRLAA DLNQVVLRFK
V