Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3196 |
Symbol | |
ID | 1184853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3589345 |
End bp | 3590259 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637394550 |
Product | transcriptional regulator, LysR family |
Protein accession | NP_792984 |
Protein GI | 28870365 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00241672 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCGC TCGGTAGCAT TGCGCTGTTT GTGCTGGTCA CAGAAACACG AAGTTTTACC CTGGCGGGCA AGCGCCTGGG TATTTCTTCA TCGGGTGTGG GCAAGAGTGT CGGTCGTCTG GAGGAAAGCC TGGGCGTGCG GCTTTTTCAT CGCAGCACCC GCAGCATTGC CTTGACGCTT GAGGGGTCGA TATTTCTCGA TCGCTGCAGA CGCATTCTGT CGGAGCTGGA CGCCGCGCAG TTGGAGCTGA GCAATGCCCG GGATTTGCCA AAAGGCCGGC TGCGTATCAG CGTGCCATTG GTTTTCGGGC TGGTAATGCC GGTCGTTATC CAGTTCATGC GCACCTATCC CGAGATTGAG CTGGACATCG ACTTCTCAGA CCGTATGGTC GATATCATCG ACGAGGGATT TGACGTTGTC CTGCGCACCG GAGAACCGAG CGATTCCAGG CTCATGTCGA AAAGAATGGG CAGTTTTCAG TTGTGCATTG TCGGCTCACC GGATTATTTT GCCCGGCATG GACTGCCTGA ACAGCCTGCC GACCTGATAC ATCACGCCTG TTTGCAGCAC AAGTTTCCCT CCACCGGAAA GTTTGAACAC TGGCCGCTGC GTCGTGAGCC CGGATCCGAG GATTTCGAGT TGCCGCAGAC CATGGTGTGC AATACCACCG AAGTGCTTGT CGAAGTTGCG CGAGCAGGCC TGGGCATTAC CTGCCTGCCG GATTTCATGC TGGCCTCTGC CATCCGCAAA GGTGAATTGA TACCGATATT GTCTGATTAC ACTCTGCACA CCGGGAGCTT CAGATTGTTC TGGGCATCGA GCAAGCATCT TTCCGTGCGT TTGCGGGTGT TTATCGACTT CATGCACGCG AATTTGTTTG CGCCTGCGAG GGTTGGTCAG GAAGGCCGAT CTTAA
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Protein sequence | MESLGSIALF VLVTETRSFT LAGKRLGISS SGVGKSVGRL EESLGVRLFH RSTRSIALTL EGSIFLDRCR RILSELDAAQ LELSNARDLP KGRLRISVPL VFGLVMPVVI QFMRTYPEIE LDIDFSDRMV DIIDEGFDVV LRTGEPSDSR LMSKRMGSFQ LCIVGSPDYF ARHGLPEQPA DLIHHACLQH KFPSTGKFEH WPLRREPGSE DFELPQTMVC NTTEVLVEVA RAGLGITCLP DFMLASAIRK GELIPILSDY TLHTGSFRLF WASSKHLSVR LRVFIDFMHA NLFAPARVGQ EGRS
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