Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3189 |
Symbol | |
ID | 1184846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3579764 |
End bp | 3580717 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394543 |
Product | hypothetical protein |
Protein accession | NP_792977 |
Protein GI | 28870358 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0510] Predicted choline kinase involved in LPS biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.854112 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATATG CACAAAGCCT GAACACACGC CTGCTTGGCG CGTTGGCGAG TTACGGGTTC GACTCAGAGC CGCACGTCGA ACCCGTCACG CAGGGCGTGG CATCGCCGTC GCGGCTGTCC ACCGAGTGGG CAGGCTTTCG AGTGTCGTTC GGGGAAAGCC GCTGTTACGC AAAAGTGCTG TACGCCGACA TGACGCCTGT TATCGATTTC GTATCTGCAG CGCAGGCCAG TCAGTGCGCA GGCCTCAGCG GTGCAGCGCC ACGTTTGCTG AGTGGCGACG AGCAGAGTGG CGTGCTGATT TTCGAGGACC TGGGGCCTCA ATGGCGCGCC GCGCGGCTTG ATGACCTGCT CGTACCGGGT CGGCTGGACG CGCTGTGGGC ACTCAAACGC CAGGTGCACG CCGGGCCAGT GCCGGATTTC ATCCGCTCGC CGATGGCGGA TATCGAGCGC CTTCGCGCAC TGTGCAAGCG CGACGGCGTT GCGCTGCCCG CCGAACAGCA ATGGATCGAC CGCTGCGTGG ACATGGTCTG GCAGGCCTTG CAAAAACGTC AGGTTCGGTC CGTCCCGGTG CACGGTGATG GCGTGGCCAG CAACGTGATG GTGTCCGGTG ATGGCCAGTT ACGACTGGTG GATTTTGACT ATGGCGGCTG CATGGACCCG TGGTACGACG TGGCGATTAC CCTCAATGAG CTTTATTCGT TCGAGAGCGA GTGGCGCGCC GGCATCAGCG CTTGGGCGGG CCAGTGCCTT GAGGTCGACT ACGCCGTCTG CCGGCTGTAT GCGCTGATCA ATGACTGGTA CTGGACATTG TGGGGATTCT GGAGCGGTAG CACTTCTGCC AGGCAACTGG AGTTCTCCAA AGTCGGGCAG TGGACGTTAC TGCGCTGTCG GCAATGTGTT CAGGACCCAC GGCTGGAAGG CTGGATGCGT CAGGTTCAGG AGGGTAAGGC ATGA
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Protein sequence | MSYAQSLNTR LLGALASYGF DSEPHVEPVT QGVASPSRLS TEWAGFRVSF GESRCYAKVL YADMTPVIDF VSAAQASQCA GLSGAAPRLL SGDEQSGVLI FEDLGPQWRA ARLDDLLVPG RLDALWALKR QVHAGPVPDF IRSPMADIER LRALCKRDGV ALPAEQQWID RCVDMVWQAL QKRQVRSVPV HGDGVASNVM VSGDGQLRLV DFDYGGCMDP WYDVAITLNE LYSFESEWRA GISAWAGQCL EVDYAVCRLY ALINDWYWTL WGFWSGSTSA RQLEFSKVGQ WTLLRCRQCV QDPRLEGWMR QVQEGKA
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