Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3176 |
Symbol | |
ID | 1184833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3567159 |
End bp | 3568229 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394532 |
Product | thermolysin metallopeptidase, putative |
Protein accession | NP_792966 |
Protein GI | 28870347 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3227] Zinc metalloprotease (elastase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.107926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGCGACG ACCGAAACCC CCTGCATTGT TTCATTCCGC CTTACATGCT GGAGCGTATG GCGCAGTCCC CCAAGAACCT GATCAGCGCC AGAGCCATTG CCAACCTGAC CAGCAGCTCG GCGTTCCTTG CCTCTCGCCT TTCTGCGCGA GCCATGCCAT CCATGCACGC TATCAAGTCG CCGGATGGCA AAAAACACCG CGCGATTCAC GACGCCAAAG GTACTGACGA TCTTCCCGGC GTTATCGTCC GCAAAGAGGG CCAGGCACCG ACCGGCGACA AGGCTGCAGA CGAAGCCTAC GATGGCTCCG GTGATGTCTA TGACTTCTAT GCGCAGCTCT TCGAGCGCAA TTCACTGGAT GACAATGGCA TGTCACTGGT GTCGACTGTG CATGTCGCCG AAGTCGACTT CAATGGCGAC CACGTGCCCC TGAGCAATGC CTATTGGAAT GGCAGCCAGA TGGCGTACGG CGATGGCGAT GACCTGGTCT TCAAGCGATT CACCGGCAGC CTTGAAGTGA TCGGCCACGA GCTGACCCAC GGCGTGCAGA GTTTTACCTC CAACCTGGAC TACAAAGGCC AGTCCGGTGC GTTGAATGAA CACTTTGCCG ATGTGTTCGG CATGCTGGTA CGTCAGTGGA AGCAAGGCAC CAGCGCCGCC GAATCGGACT GGGTGGTCGG CAAGGAGTTG CTGGTGCCTG CACCGACCCG GCGAGGCATT CGTGACATGG AAAGACCCGG CACCGCCTAT GCCAACGACC CGGACCTTGG CGACGATCCG CAACCGGCAA CAATGGCGGA TCTGTATAAG GGGGCCAAGG ACCGGGGCGG CGTGCACATC AACTCGGGCA TTCCCAATCG GGCCTTCGTG CTGGTGGCCA AGGCACTCGG CGGAAATGCC TGGGAAGTGG CAGGCAGAAT CTGGTATGAA ACGATGTTGG CGTTGGAATC GGACAGCCAG TTCGTCGATT GCGCCAAAAC CAGCATAAAA ATCGCCGGCG ACTCGCGTTT TGGTGCAAAA GCCAAAAAAG CCGTGCAAGC GGCCTGGAAA GAGGTCGGCG TCAAGGTGTA A
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Protein sequence | MCDDRNPLHC FIPPYMLERM AQSPKNLISA RAIANLTSSS AFLASRLSAR AMPSMHAIKS PDGKKHRAIH DAKGTDDLPG VIVRKEGQAP TGDKAADEAY DGSGDVYDFY AQLFERNSLD DNGMSLVSTV HVAEVDFNGD HVPLSNAYWN GSQMAYGDGD DLVFKRFTGS LEVIGHELTH GVQSFTSNLD YKGQSGALNE HFADVFGMLV RQWKQGTSAA ESDWVVGKEL LVPAPTRRGI RDMERPGTAY ANDPDLGDDP QPATMADLYK GAKDRGGVHI NSGIPNRAFV LVAKALGGNA WEVAGRIWYE TMLALESDSQ FVDCAKTSIK IAGDSRFGAK AKKAVQAAWK EVGVKV
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