Gene PSPTO_3171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3171 
Symbol 
ID1184828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3563563 
End bp3564213 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content58% 
IMG OID637394527 
Producttranscriptional regulator, TetR family 
Protein accessionNP_792961 
Protein GI28870342 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.323724 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCATCG AAGAATCAGG GAATGAATCC GAAGCATCGG TAGCGCCCAA GCGACGCCGG 
GCGCCCAAGG GCGACATGCG CAGAAAGGCC TTGCTGGACG CTGCCACGGT GGTGTTCGCC 
AGAGACGGCT ACTCGAGTGC ATCCATGCGC GAGGTTGCGC TGCTGGCCGG CATCACGACG 
GTTGGCTTGT TGCATCACTT TCCCAACAAG GAAGCGCTGC TCAGCGCGTT GCTGGAGCGA 
AGGGATCAGC GGGTCACGTC CAGGTTTCAG GACATGGTCA CCGAACTGAC GCTTGACGGG 
TTTCTGAAGT TTCTCAAGCT GAGCATGAGC TTCAGCGTCG AAAATGCCGA TGAGTGCCAG 
GCTGCGCTGT TGATGAACAC CGAAAGCCTC TCACCTTCAC ACCCGGCCTG TTCATGGCAC 
CGTGAGCGAT TTCAGATGAC CCACGAGCAT GCCCGCGGTC ATCTGAACGC GTTGATAGAA 
GCAGGGGAGG TTCGTGCGGA CATCAACGTG AAAGCCCTGG CCCAGGAAAT CTTCTCGGTC 
ATGGACGGTT TGCAGATTCA GTGGCTGAGA AGCCCGGACG ACGTGGATGT CATGGCGGTG 
TTCGAGGTTT ACGTGCAGCG TCTGGGAAGG GATATCAAGG CTCATCCCTG A
 
Protein sequence
MVIEESGNES EASVAPKRRR APKGDMRRKA LLDAATVVFA RDGYSSASMR EVALLAGITT 
VGLLHHFPNK EALLSALLER RDQRVTSRFQ DMVTELTLDG FLKFLKLSMS FSVENADECQ 
AALLMNTESL SPSHPACSWH RERFQMTHEH ARGHLNALIE AGEVRADINV KALAQEIFSV 
MDGLQIQWLR SPDDVDVMAV FEVYVQRLGR DIKAHP