| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3155 |
|---|
| Symbol | |
|---|
| ID | 1184812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3545226 |
|---|
| End bp | 3548708 |
|---|
| Gene Length | 3483 bp |
|---|
| Protein Length | 1160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394512 |
|---|
| Product | pyruvate ferredoxin/flavodoxin oxidoreductase family protein |
|---|
| Protein accession | NP_792946 |
|---|
| Protein GI | 28870327 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000412297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGG CTGATATTCG TCTGGATGAT AAATACCGGC TTGCCACCGG CAATCTGTAC
CTGACCGGCA CCCAGGCGCT GACCCGTCTG CCGATGCTGC AAAAGCAGCG CGATGAAGCG
CAGGGCCTGA ACACGGCGGG CTTCATTTCC GGCTATCGCG GCTCGCCGCT GGGCAATCTG
GATAAAAGCC TCTGGGATGC CAAGGACTAC TTGCAACAGA ACGCCATCCA TTTCCAGCCG
GGTATCAACG AAGAATTGGC GGCCACGGCC GTCTGGGGCA GCCAGCAGGT CAATCTCTTT
CCCCACGGCA AGTACGACGG CGTGTTTGCG CTGTGGTATG GCAAAGGTCC GGGGGTGGAT
CGCTGCGGTG ATGTGTTCAA ACACGGCAAC TCGGCCGGGG TCGCGCCCAA AGGCGGCGTG
TTGATTCTTG CGGGCGATGA TCATGGCTGC AAATCCTCGA CCATCGCCCA CCAGAGCGAA
CACGCGTTCA TCGCGTCGAT GATCCCTGTG CTCAACCCGA GCAACGTTCA GGAAATTCTC
GACTACGGCA TTATCGGCTG GGAGCTGTCG CGCTACAGCG GGTGCTGGGT GGCGATGAAA
ACCATTGCCG AAAACGTCGA TTCGTCTGCT GTCGTCGAAG TCGATCCGCT GCGCATCAAG
ACGCACATCC CGGAAGACTT CGTGCTGCCA GAAGGCGGCC TGCACATCCG CTGGCCTGAC
CCACCGCTGG CCCAGGAAGC GCGGCTCAAT ACCTACAAGA TTTATGCCGC AAGAGCTTTC
GCCCGCGCCA ATCAGCTCAA TAAGGTGGTC ATCGATTCTG CGCAACCGCG GCTGGGCATC
ATCACCACCG GCAAATCTTA TCTCGACGTG CGTCAGGCGC TGGAAGAGCT GGGTATCGAT
CAGGAGCTGT GCGACAAGGT GGGCATTCGT GTGCTCAAGG TCGGCATGAG CTGGCCACTT
GAACCCGTGT CGGTGCATGA CTTTGCCGAG GGGCTGGACG AGATTCTGGT GGTCGAGGAA
AAACGCAGCG TCATCGAAGA CCAACTTACC GGCCAGCTTT ATAACTGGCC GGTGGATCGT
CGTCCGGTGG TGGTCGGCGA GTTCGATGAG CAAGGCCGTT CGCTGTTGCC GAACCTCAGC
GAGCTGACGC CGGCAATGAT CGCCAGGGTC ATCGCCAAAC GTCTGGCGCC GTTCTACAGC
AGCCCGCAGA TCGAAGCACG CCTGCAATTT CTCAGCGACA AGGAAAGGGC GCTTCAGGCG
CCGCTGTTCA ATACCTTGCG CACCCCGCAT TTTTGCTCCG GCTGCCCGCA CAACACCTCG
ACCCGAGTGC CGGAGGGCAG TCGTGCCCTG GCCGGGATCG GCTGCCACTA CATGACCATC
TGGATGGACC GCGAAACCGA GACCTTCACG CAGATGGGCG GCGAGGGCGT GACCTGGATC
GGCCAGGCGC CCTTCACTGA AACCCCCCAC GTGTTCCAGA ACCTCGGCGA CGGCACCTAT
TTTCACTCCG GGCACCTGGC GTTGCGTGCG GCGGTGGCCT CCAAGGTCAA CATTACTTAC
AAGATTCTCT ACAACGATGC GGTGGCCATG ACGGGCGGTC AGCCTATAGA CGGCGTGCTG
CGCGTCGATC AGTTGAGCCG CCAGGTGTTC AACGAGGGCG TACAGCGCAT TGCACTGGTC
TCCGACGAGC CGGACAAATA CCCGAGCCGG AAAGATTTCG CTTCAATTAC CACCTTTCAT
CACCGACGCG ACCTGGACAG CGTGCAACGC GAACTGCGTG AGTTCAAAGG GGTTTCGGTG
ATCATCTACG ACCAGACCTG CGCGACTGAA AAGCGTCGCC GGCGCAAACG CGGCACCCTG
CCCGATCTGG AAAAACGCGC GTTGATCAAC CCGGCCGTGT GCGAAGGCTG TGGTGATTGC
GGGGTCAAAT CCGGTTGTTT GTCGGTGCTG CCCAAGGAAA CCGCTCAGGG CCGCAAGCGG
GAAATTGACC AGAGTGCCTG CAACAAGGAT TTCAGCTGCA TCGAGGGTTT CTGCCCGAGT
TTCGTCACCG TGCATGGCGG CAAATTGCGT AAGCCTGTGG TGCCCAAACA GGTCGAGGCA
TTCGCGCGTC TGCCGGAACC TGTGCTGCCA TCGCTGGAGC GGCCGTTCAA TATTCTGCTG
CCCGGCGTCG GCGGGACTGG CGTGACCACG GTCGGGGCGA TGCTCGGTTA TGCCGCTAAC
CTGGAAGGCA AGGGTTGCAG CGTGCTGGAC CAGGCCGGGC TGGCGCAAAA GTTCGGTCCG
GTGGTCAGCC ATATCCGCAT TGCTGCGCGT CAGGAAGACC TGTTCGCGGT ACGCATTGCC
GCCGGTGAGG CGCACCTGTT GCTGGGTTGC GATCTGCTGG TTGCCGCAGG CCCCGATGCA
ATCGCCAAGC TCGACAGCAA AATTTCCCAT GCGGTGATCA ACAGTCAGCA AACGCCAACC
GCTGAATTCA CACGCAACCC GGATGCCGTG TTCCCGGCCG AGGCGATGAA GCAGACTATT
ATTGATGCCG TCGGTGCCGA TAAGACTCAT TTTGTCGAAG CCACTTCGTT GGCAACCCGT
TTGATGGGCG ACAGCATTGC CAGCAACCTG TTCATGCTCG GTTATGCGTT TCAACTGGGC
CTGATTCCCC TGACTTCGGC GGCCATCGAA AAGGCGATCG AGCTCAATGG CGTGGCAGTC
AACCTCAATC AGCAGGCGTT TCTCTGGGGG CGTCGCACGG CGCATGACCC TGCCGCCGTC
GAGGCGTTCG TCAACCCGCA ACCGCAGGTC AGCGAGCCGC AGCAGATGGA TCTCGATCAA
CGTATTCAAA GCAACGTTGC CGCCTTGACG CAGTACCAGA ACAGCGCGTA CGCCGAGCGT
TATCTGGGGC TGGTACAACG GGTACAGGAG GCTGAATCAC GGGTGTTTCC CGGTCAGCAG
CCGACGCTGA CCGAAGCTGT GGCCTTCAAC TACTTCAAGC TACTGGCTTA CAAGGACGAA
TACGAGGTGG CGCGGCTGTA CAGCAACGGC GACTTCACCC GCCAGCTGGA GGCGCAGTTC
GAGGGTGATT ATCGACTGGA GTTTCACCTG GCACCGTCCT GGCTGGCCAA GCGTGACCCG
CACAACGGTC AACCGCGCAA ACGCAGTTTC GGGCCGTGGA TGCTGCGCGC GTTCGATGTG
CTGGCGACAT TCAAATTCCT CCGTGGCACA GCGTTCGACC CGTTCGGTCG CAGCCTGGAG
CGCAAGCAGG AGAGGGCGCT TATTGATCGT TATGTTGGCG ATGTCGAACT GATCCTGCAG
CATCTCCAGA CGCAGAACCG CCATACGGCG CTGAGCCTGG CACGCCTGCC GGAAAAGATT
CGCGGTTATG GTCACATCAA GGAAGCCGCC ATGAAGGCTG CTGCATTGCA GGCCGAGATC
CTGCGCAAAA GCCTGGAGAG CGGCGAGGTG CTAGCGCCGA AGTTGTATGA GGTGGCTGCT
TGA
|
|---|
| Protein sequence | MSLADIRLDD KYRLATGNLY LTGTQALTRL PMLQKQRDEA QGLNTAGFIS GYRGSPLGNL
DKSLWDAKDY LQQNAIHFQP GINEELAATA VWGSQQVNLF PHGKYDGVFA LWYGKGPGVD
RCGDVFKHGN SAGVAPKGGV LILAGDDHGC KSSTIAHQSE HAFIASMIPV LNPSNVQEIL
DYGIIGWELS RYSGCWVAMK TIAENVDSSA VVEVDPLRIK THIPEDFVLP EGGLHIRWPD
PPLAQEARLN TYKIYAARAF ARANQLNKVV IDSAQPRLGI ITTGKSYLDV RQALEELGID
QELCDKVGIR VLKVGMSWPL EPVSVHDFAE GLDEILVVEE KRSVIEDQLT GQLYNWPVDR
RPVVVGEFDE QGRSLLPNLS ELTPAMIARV IAKRLAPFYS SPQIEARLQF LSDKERALQA
PLFNTLRTPH FCSGCPHNTS TRVPEGSRAL AGIGCHYMTI WMDRETETFT QMGGEGVTWI
GQAPFTETPH VFQNLGDGTY FHSGHLALRA AVASKVNITY KILYNDAVAM TGGQPIDGVL
RVDQLSRQVF NEGVQRIALV SDEPDKYPSR KDFASITTFH HRRDLDSVQR ELREFKGVSV
IIYDQTCATE KRRRRKRGTL PDLEKRALIN PAVCEGCGDC GVKSGCLSVL PKETAQGRKR
EIDQSACNKD FSCIEGFCPS FVTVHGGKLR KPVVPKQVEA FARLPEPVLP SLERPFNILL
PGVGGTGVTT VGAMLGYAAN LEGKGCSVLD QAGLAQKFGP VVSHIRIAAR QEDLFAVRIA
AGEAHLLLGC DLLVAAGPDA IAKLDSKISH AVINSQQTPT AEFTRNPDAV FPAEAMKQTI
IDAVGADKTH FVEATSLATR LMGDSIASNL FMLGYAFQLG LIPLTSAAIE KAIELNGVAV
NLNQQAFLWG RRTAHDPAAV EAFVNPQPQV SEPQQMDLDQ RIQSNVAALT QYQNSAYAER
YLGLVQRVQE AESRVFPGQQ PTLTEAVAFN YFKLLAYKDE YEVARLYSNG DFTRQLEAQF
EGDYRLEFHL APSWLAKRDP HNGQPRKRSF GPWMLRAFDV LATFKFLRGT AFDPFGRSLE
RKQERALIDR YVGDVELILQ HLQTQNRHTA LSLARLPEKI RGYGHIKEAA MKAAALQAEI
LRKSLESGEV LAPKLYEVAA
|
|---|
| |