| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3130 |
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| Symbol | glgX |
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| ID | 1184787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3519308 |
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| End bp | 3521491 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394488 |
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| Product | glycogen operon protein GlgX |
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| Protein accession | NP_792922 |
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| Protein GI | 28870303 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.167727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACGA AGTCAACTCC AGCGGCAGAT GAAAGCTCCG CTTCGCACGA CAGTTCTGCC
AGCACCCCGA CGCGCATTCG TGAAGGGCTT CCCTTCCCTC TCGGTGCCAG CTGGGATGGT
CTGGGTGTAA ACTTCGCCCT GTTCTCGGCC AACGCCACCA AAGTCGAACT CTGCCTGTTC
GATTCGACCG GTGAAGTAGA GCTGGAGCGT ATCGAGCTTC CGGAATACAC CGACGAGATC
TACCACGGCT ATCTGCCCGA CGCTCACCCT GGGCTGATTT ACGGCTACCG TGTTTATGGT
CCTTACGATC CGAAGAACGG CCATCGCTTC AACCACAACA AATTGCTGAT CGACCCGTAC
GCCAAGCAGT TGGTCGGTGA GCTCAAATGG TCGGAAGCGT TGTTCGGCTA CACCATCGGC
CATGCTGACG GCGACCTGAG CTTCGACGAG CGCGACAGCG CGCCGTTCGT GCCAAAAAGC
AAGGTGATTG ACGAGGCCTA CACTTGGGGC CGCGATCAGC GCGTCGGTAC GCCGTGGGAC
AAGACCATTT TCTATGAGAC CCACGTGCGC GGCATCACCA TGCGCCACCC TGAGGTCGCG
GAAGAGTTAC GCGGTACGTT TGCAGGCCTG GGATCAGCGC CCGTCGTCGA TCACATCCGC
AAGCTGGGCG TGACGTCTGT CGAGCTGCTG CCGATCCATG CGTTCGTCAA CGATCAGCAT
TTGTTGCAAA AAGGCATGAC CAACTACTGG GGCTATAACA GCATCGCGTT CTTCGCCCCG
GACCCGCGCT ACCTGGCCAG CGGCAAGATC GCCGAGTTCA AGGAAATGGT CGCACACCTG
CACCATGCAG GCCTGGAGGT CATTCTCGAC GTGGTCTACA ACCACACCGC CGAAGGCAAC
GAGCTGGGTC CGACCCTGTC GATGCGCGGT ATCGACAACG CCTCATATTA CCGGCTGATG
CCGGACGACA AACGCTATTA CATCAACGAT TCCGGTACCG GCAACACCCT CGACCTGAGC
CACCCTTGCG TATTGCAGAT GGTCACCGAC TCGCTGCGTT ATTGGGCGTC GGAAATGCAC
GTCGACGGCT TCCGTTTCGA CCTGGCAACC ATTCTCGGTC GTTACCACGA TGGTTTCGAT
GAGCGTCACA GCTTCCTGGT TGCGTGCCGT CAGGACCCGG TCCTGCGTCA GGTCAAACTG
GTCGCCGAGC CTTGGGATTG CGGCCCGGGT GGCTATCAAG TGGGCGGCTT CCCGCCGGGC
TGGATGGAAT GGAACGACAA GTTCCGTGAC ACCGTGCGGG CCTTCTGGAA AGGCGACGAA
GGCCAACTGG CCGACTTCGC TGCACGCATG ACCGCTTCGG GCAACATGTT CAACCAGCGC
GGTCGCCGCC CTCAGGCGTC GGTGAACTTC ATCACTGCGC ACGATGGCTT CACGCTGCAC
GACCTGGTGT CGTACAACGA CAAGCACAAC GAGGCCAACG ACGAAAACAA CCAGGACGGC
AGCAATAACA ACGTGTCCTG GAACCACGGC GTCGAAGGTC CGACCGAAGA CCCGGAAATC
AACACCCTGC GTCTGCGCCA GATGCGTAAC TTCTTCGCCA CATTGCTGCT GGCTCAAGGC
ACGCCGATGA TCGTTGCCGG TGATGAATTC GCGCGCACTC AGCACGGCAA CAACAATGCC
TATTGCCAGG ACAGTGAAAT TGGCTGGATC AACTGGGACC TGGACGAAGA CGGCGAAGCG
CTGCTCAAGT TCGTCACCCG TGTGATCAAG TTGCGTCAGA GCTACCCTAT CCTGCGTCGT
AGCCGCTTTT TGGTCGGCGA CTACAACGAA GAAATCGGCG TCAAGGACGT AACCTGGCTT
GCGCCAAGTG GCGAAGAAAT GAGTGTCGAG CAGTGGCACG ATGCCAACGG CCGCTGCCTG
GGCATGCTGA TGGATGGCCG CGCGCAGGAA ACCGGCATTC GTCGTCCGGG TGCCGACGCC
ACGCTGCTGT TGGTGGTCAA CTCGCACCAT GACGGCGTCA ACTTCACCTT GCCGCAAGTA
CCGGAAGGCA CCCATTACGA GTGCCTGATC GACACTAATC AGGACGATGC ACGCAGCAAG
GAGCAGTTTG CGTTCGGTTC GCATTACACC GTCACCCCAC GTTCGCTGCT GCTGTTTGAA
GTCAAGCGTG AAGATCAGCA ATGA
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| Protein sequence | MNTKSTPAAD ESSASHDSSA STPTRIREGL PFPLGASWDG LGVNFALFSA NATKVELCLF
DSTGEVELER IELPEYTDEI YHGYLPDAHP GLIYGYRVYG PYDPKNGHRF NHNKLLIDPY
AKQLVGELKW SEALFGYTIG HADGDLSFDE RDSAPFVPKS KVIDEAYTWG RDQRVGTPWD
KTIFYETHVR GITMRHPEVA EELRGTFAGL GSAPVVDHIR KLGVTSVELL PIHAFVNDQH
LLQKGMTNYW GYNSIAFFAP DPRYLASGKI AEFKEMVAHL HHAGLEVILD VVYNHTAEGN
ELGPTLSMRG IDNASYYRLM PDDKRYYIND SGTGNTLDLS HPCVLQMVTD SLRYWASEMH
VDGFRFDLAT ILGRYHDGFD ERHSFLVACR QDPVLRQVKL VAEPWDCGPG GYQVGGFPPG
WMEWNDKFRD TVRAFWKGDE GQLADFAARM TASGNMFNQR GRRPQASVNF ITAHDGFTLH
DLVSYNDKHN EANDENNQDG SNNNVSWNHG VEGPTEDPEI NTLRLRQMRN FFATLLLAQG
TPMIVAGDEF ARTQHGNNNA YCQDSEIGWI NWDLDEDGEA LLKFVTRVIK LRQSYPILRR
SRFLVGDYNE EIGVKDVTWL APSGEEMSVE QWHDANGRCL GMLMDGRAQE TGIRRPGADA
TLLLVVNSHH DGVNFTLPQV PEGTHYECLI DTNQDDARSK EQFAFGSHYT VTPRSLLLFE
VKREDQQ
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