| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3126 |
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| Symbol | |
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| ID | 1184783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3512055 |
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| End bp | 3513869 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394484 |
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| Product | alpha-amylase family protein |
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| Protein accession | NP_792918 |
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| Protein GI | 28870299 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.524605 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCTGC GTACAGACGA TAACTGGCGC CACGGCGCCG TTTTGTTGGA CCCTGAACAC
ACCCGGTTTG CCCTCTGGGC ACCGGATGCC TCCTACGTAA GTGTCGAACT GCAGGATGGC
CAGTCTCTGG CCATGCTGCC CCAGCCAGAA GGCTGGTTCG TGCTTGAGGC CCGCTGCAAG
GCGGGTACTC GATACCGCTT CAAAGTCGAC CATACGCTCG AAGTGCCAGA CCCGGCATCG
CGTGCGCAGG TCGATGACGT TCATTCGCAA AGCATCGTGG TCGATCCCCA GGCCTATTCG
TGGCAAAACA CCGCATGGAA TGGTCGTCCG TGGCATGAGG CTGTCATCTA TGAGCTGCAC
GTCGGCGCAA TGGGCGGCTA TGCAGCGGTC GAGAAGCATC TTGCGCGCCT CGCCGCGCTG
GGCATCACCG CCATTGAGCT GATGCCGCTG GCGCAGTTCC CCGGTGATCG CAACTGGGGC
TATGACGGCG TTCTGCATTA TGCCCCGCAG TCTTCATACG GCACTCCCGA ACAGCTCAAA
CACTTGATCG ACACCGCACA TGGCGTTGGC CTGATGGTGA TTCTGGACGT GGTGTACAAC
CACTTCGGTC CGGACGGCAA TTACCTGGGC AGTTACGCCA AGGAGTTTTT CCGCAGCGAC
CTGCACACCC CCTGGGGCGA CGCAATTGAT TTCAGGCGCC CGCAAGTGCG GGATTTCTTC
GTCGACAATG CCCTCATGTG GCTGCTCGAA TACCGCATCG ACGGGCTGCG CATGGACGCC
GTCCACGCCA TTCGCGACGA GACCTTCCTG CCCGAGTTCG CCACCCGCGT GCGCGAGCGG
ATCGAACCGT CCAGGCATGT GTGGCTGAAC CTTGAAAACG AGTTCAATCA GGCCAGCCTG
CTCGACAAGG GTTTCGACGC GCAATGGGAC GATGACGGGC ACAACACGCT GCACGTGCTG
TTGACCGGCG AAACCGATGC CTATTACTCG GATTTCGCCA AAGAGCCGAC CCACAAGCTT
GCGCGCCTGC TCGGCGAAGG TTTTGTCTAC CAGGGTGAAC AGACGCGTCA CGGGCACACC
CGAGGCGAGC CCAGCGGCCA CCTTGCACCC AGCGCCTTTG TGCTGTTCCT GCAGAACCAC
GACCAGATCG GCAACCGTGC GCTCGGCGAG CGTCTGCCAC AGCTCTGTTC CCCTGATGCG
CTCAGGGCTG CGACTGCGCT GTTGTTGCTC TCGCCGATGA TTCCGCTGAT GTTCATGGGC
GATGAATGGG CCGCGAGCGA ACCCTTCCTG TTTTTCACCA GCCATCACGG CGAGCTGGCC
GATGCCGTGC GTGAAGGGCG TCGCAAGGAG TTCGCCGACT TCGCAGCGTT TGCCGATCCA
GAAAAGCGCG AGCACATTCC TGATCCCAAC GACATCAAGA CCTTCGAGGC CTCCCGCCCG
GCGTTCTCAG CGACAGAACT GCAGACCGAG AAAGGTCTGG AACACCGTCA ATGGGTCGAT
TACTACGCGC AATTGCTGGC CTTGCGTCAT CAGGAAATCG TCCCGCGCCT TCAGGGTGCG
AGCTTCCTCA ACACCGAGAT CCTTGGCGAC AAGGCGGTCA GTGCACGCTG GACGCTGGGC
GACGGCAGTG TGCTGCGTAT CGACCTGAAC CTCAGCGAAC AGCCTGTTGC AACCACGCCT
GCGCCACATG CCCGGGAGAT TTTCTCCAGC GCTGCGAAAT CGTCCGAACT TTCCCCTGAC
GCAATCCTCA ATCCTTACAC GGCCATTGTC AGCCTGACAG CAAGTGATGT TCTGGAGGAA
CAGGATGAAC AATGA
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| Protein sequence | MPLRTDDNWR HGAVLLDPEH TRFALWAPDA SYVSVELQDG QSLAMLPQPE GWFVLEARCK
AGTRYRFKVD HTLEVPDPAS RAQVDDVHSQ SIVVDPQAYS WQNTAWNGRP WHEAVIYELH
VGAMGGYAAV EKHLARLAAL GITAIELMPL AQFPGDRNWG YDGVLHYAPQ SSYGTPEQLK
HLIDTAHGVG LMVILDVVYN HFGPDGNYLG SYAKEFFRSD LHTPWGDAID FRRPQVRDFF
VDNALMWLLE YRIDGLRMDA VHAIRDETFL PEFATRVRER IEPSRHVWLN LENEFNQASL
LDKGFDAQWD DDGHNTLHVL LTGETDAYYS DFAKEPTHKL ARLLGEGFVY QGEQTRHGHT
RGEPSGHLAP SAFVLFLQNH DQIGNRALGE RLPQLCSPDA LRAATALLLL SPMIPLMFMG
DEWAASEPFL FFTSHHGELA DAVREGRRKE FADFAAFADP EKREHIPDPN DIKTFEASRP
AFSATELQTE KGLEHRQWVD YYAQLLALRH QEIVPRLQGA SFLNTEILGD KAVSARWTLG
DGSVLRIDLN LSEQPVATTP APHAREIFSS AAKSSELSPD AILNPYTAIV SLTASDVLEE
QDEQ
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