Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3119 |
Symbol | |
ID | 1184776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3503526 |
End bp | 3505343 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394477 |
Product | glycosyl hydrolase, family 15 |
Protein accession | NP_792911 |
Protein GI | 28870292 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0769806 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGCAC TGATCGAAGA CTACGCATTG CTGGGCAACT GTCAGACAGC TGCCCTGGTC GCCCGGGATG GCTCACTGGA CTGGTTGTGT TTTCCGCGCT TTGACTCGAC GGCCTGTTTT GCGGCATTGC TGGGCAGCGA AGAACACGGG CGCTGGAAGA TCGCGCCACG CGCCGAGGTT ATCGCGGTTG AGCGCCGTTA TCGTGAAGGG ACGCTGATTC TCGAGACCGT CTTCGAAACC CGTGACGGTC GCGCGATGTT GATCGATTTC ATGCCCATGA ACACCAGCGG CCATGTAGTG CGTATGGTGG TCGGGCTGAG CGGGCAGGTG GAGTTCGGCG TAGACCTTGC AATTCGCTTC GATTACGGCA GCAGCGTGCC GTGGGTCGAG CGCAAGGACG CGCATACGTT GACAGCGGTG GCCGGTCCCG AAATGCTGGT TTTGCACAGC CCGGTGGCCT TGCATCCGCA GGATCACCAT ACCGCCAGTC AATTTCAGGT CGGGGAAGGT GAGCGCAAGG TGTTCGTTCT GGCGTACCAG CCTTCCTTCG AACCTTTGCG CGTACAGATC GATCCCGATC ATGCGCTCGA GACCACTGCA GCCTACTGGC GCGAGTTTTC TGATCGGTGC CCTGATGTCG GGCCGTGGAC GGGGCAGGTG AAACGCTCGC TGATCACCCT CAAGGCCATG ACTTATGCGC CCACCGGCGG CATTGTTGCC GCCGTGACGA CCTCGTTGCC TGAGCAATTG GGCGGCGAGC GTAACTGGGA CTACCGCTAT TGCTGGTTGC GCGACGCGAC GATGACCCTG CTGGCTTTCA TGAATCTGGG TTATTTCGAG GAAGCCACCG CCTGGCGCGA TTGGCTATTG CGGTCGATTG CCGGCAACCC GGAACAGATA CAGATCATGT ACGGCGTGGG CGGTGAGCGG CGTTTGCAGG AATATGAACT GCCGTGGTTG AGCGGCTACG AGCACTCGCT GCCAGTGCGA GTGGGTAACG GCGCGGCCAA TCAGGTTCAG CTGGATGTCT ACGGCGAAGT CGCAGATGCG ATGATTCAGG CCCTTAAAGG CGGCATGCCG CAGCACCCGC GCAGCGTGGC TATTTCCAAG GTGGTGATGC CTTATCTGGC GAAGATCTGG CACCTGCCGG ACGCCGGAAT CTGGGAGATT CGCTCCGAAC CACGTCACTT CACCCATTCC AAAGTCATGG CCTGGGTGGC CTTCGACCGC AACGCCACGC AGATCGCTCA GGCTGCCGAA GGCGAAGAAG ATCGTGCTCT GGCGGAACAC TACCGGCGAG TGGCGGACGA AATCCATGCG GATGTCTGTC GCCACGGCTT TGATGCCGAA CTGGGCAGTT TCGTGCAGAC CTACGGTTCG ACAGAGGTCG ATGCCAGTTT GCTGCAGATT GTCCTGACCG GTTTTTTGCC ACCCGAAGAC CCTCGTGTCA TCGGCACTGT CGCGCAGATC GAGCGCACGC TGATGCAGGA TGGCCTGTTA CTGCGCTACG ACAATGAGCG CAGCGTCGAT GGGGTGGCAG GACGCGAAGG GACCTTTCTG GTCTGTTCGT TCTGGCTGGC CGATGCCTAC GTGCTGCTGG GCCGGGCCGA TGACGCCGCA GCGCTGTTCG AGCGGTTGTG CGGTTTGTGC AATGACGTCG GGCTACTCGC GGAGCAATAT GATCCGAAGG ATGGTCGGAT GCTGGGCAAT TTCCCGCAGG CGTTCAGTCA CATTGGCATT ATCAATACCG CGCTGAACCT GCATCGAGCG GTCTGTCCTG CGTTGACACG GACTTCAGGG GCGCTTGAGG GGGCTTAG
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Protein sequence | MAALIEDYAL LGNCQTAALV ARDGSLDWLC FPRFDSTACF AALLGSEEHG RWKIAPRAEV IAVERRYREG TLILETVFET RDGRAMLIDF MPMNTSGHVV RMVVGLSGQV EFGVDLAIRF DYGSSVPWVE RKDAHTLTAV AGPEMLVLHS PVALHPQDHH TASQFQVGEG ERKVFVLAYQ PSFEPLRVQI DPDHALETTA AYWREFSDRC PDVGPWTGQV KRSLITLKAM TYAPTGGIVA AVTTSLPEQL GGERNWDYRY CWLRDATMTL LAFMNLGYFE EATAWRDWLL RSIAGNPEQI QIMYGVGGER RLQEYELPWL SGYEHSLPVR VGNGAANQVQ LDVYGEVADA MIQALKGGMP QHPRSVAISK VVMPYLAKIW HLPDAGIWEI RSEPRHFTHS KVMAWVAFDR NATQIAQAAE GEEDRALAEH YRRVADEIHA DVCRHGFDAE LGSFVQTYGS TEVDASLLQI VLTGFLPPED PRVIGTVAQI ERTLMQDGLL LRYDNERSVD GVAGREGTFL VCSFWLADAY VLLGRADDAA ALFERLCGLC NDVGLLAEQY DPKDGRMLGN FPQAFSHIGI INTALNLHRA VCPALTRTSG ALEGA
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