Gene PSPTO_3108 details

Gene Information

• Locus tag: PSPTO_3108
• Symbol: ahpC
• ID: 1184765
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3494562
• End bp: 3495125
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637394466
• Product: alkyl hydroperoxide reductase, subunit C
• Protein accession: NP_792900
• Protein GI: 28870281
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0450] Peroxiredoxin
• TIGRFAM ID: [TIGR03137] peroxiredoxin

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00552107
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTATCA TCAACAGCCA GGTAAAACCG TTCAAGGCTA CCGCTTTCAA GAACGGCTCT 
TTCGTTGACG TTTCGGACGC CGACTTCAAA GGCAAGTGGT CTGTCGTATT CTTCTACCCG 
GCCGACTTCA CCTTCGTATG CCCGACCGAA CTGGAAGATC TGGCTGACAA CTACGACACC 
TTCCAGAAGC TGGGCGTAGA AATCTACAGC GTTTCGACTG ACACCCACTT CGCTCACGCT 
GCATGGCACA ACACTTCGCC AGCAATCGGC AAGATTCAGT ACACCATGAT CGGTGACCCG 
ACCCTGGCTA TCTCGCGCAA CTTCGACGTG CTGATCGAAG AAGCCGGTCT GGCGGATCGC 
GGTACGTTCG TGATCAACCC GGAAGGTCAG ATCAAAATCG TTGAACTGAA CGACGGCGGC 
GTTGGCCGTG ACGCTTCCGA GCTGCTGCGC AAGATCAAGG CCGCTCAGTA CGTTGCTGCT 
CACCCGGGCG AAGTCTGCCC TGCCAAGTGG AAAGAAGGCG AGGCCACTCT GGCGCCGTCT 
CTGGACCTGG TCGGCAAGAT CTGA 

 

Protein sequence

MPIINSQVKP FKATAFKNGS FVDVSDADFK GKWSVVFFYP ADFTFVCPTE LEDLADNYDT 
FQKLGVEIYS VSTDTHFAHA AWHNTSPAIG KIQYTMIGDP TLAISRNFDV LIEEAGLADR 
GTFVINPEGQ IKIVELNDGG VGRDASELLR KIKAAQYVAA HPGEVCPAKW KEGEATLAPS 
LDLVGKI